varitas: Variant Calling in Targeted Analysis Sequencing Data

Multi-caller variant analysis pipeline for targeted analysis sequencing (TAS) data. Features a modular, automated workflow that can start with raw reads and produces a user-friendly PDF summary and a spreadsheet containing consensus variant information.

Version: 0.0.1
Imports: stringr, dplyr, yaml, openxlsx, VennDiagram, assertthat, magrittr, tools, utils, tidyr, doParallel, foreach
Suggests: testthat, knitr, rmarkdown, futile.logger
Published: 2020-02-21
Author: Adam Mills [aut, cre], Erle Holgersen [aut], Ros Cutts [aut], Syed Haider [aut]
Maintainer: Adam Mills <Adam.Mills at icr.ac.uk>
License: GPL-2
NeedsCompilation: no
SystemRequirements: perl, bedtools (>=2.27.1), bwa
Materials: NEWS
CRAN checks: varitas results

Downloads:

Reference manual: varitas.pdf
Vignettes: Errors
Introduction
Package source: varitas_0.0.1.tar.gz
Windows binaries: r-devel: varitas_0.0.1.zip, r-devel-gcc8: varitas_0.0.1.zip, r-release: varitas_0.0.1.zip, r-oldrel: varitas_0.0.1.zip
OS X binaries: r-release: varitas_0.0.1.tgz, r-oldrel: varitas_0.0.1.tgz

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