tracerer: Tracer from R

'BEAST2' (<http://www.beast2.org>) is a widely used Bayesian phylogenetic tool, that uses DNA/RNA/protein data and many model priors to create a posterior of jointly estimated phylogenies and parameters. 'Tracer' (<http://tree.bio.ed.ac.uk/software/tracer/>) is a GUI tool to parse and analyze the files generated by 'BEAST2'. This package provides a way to parse and analyze 'BEAST2' input files without active user input, but using R function calls instead.

Version: 2.0.1
Imports: jsonlite, Rcpp, testit
LinkingTo: Rcpp
Suggests: ape, geiger, ggplot2, hunspell, knitr, phangorn, rbenchmark, reshape2, rmarkdown, spelling, stringr, testthat
Published: 2019-03-01
Author: Richèl J.C. Bilderbeek ORCID iD [aut, cre], Joëlle Barido-Sottani [rev] (Joëlle reviewed the package for rOpenSci, see https://github.com/ropensci/onboarding/issues/209), David Winter [rev] (David reviewed the package for rOpenSci, see https://github.com/ropensci/onboarding/issues/209)
Maintainer: Richèl J.C. Bilderbeek <richel at richelbilderbeek.nl>
BugReports: https://github.com/ropensci/tracerer
License: GPL-3 | file LICENSE
URL: https://github.com/ropensci/tracerer
NeedsCompilation: yes
Language: en-US
Citation: tracerer citation info
CRAN checks: tracerer results

Downloads:

Reference manual: tracerer.pdf
Vignettes: tracerer versus Tracer demo
Demonstration of estimating the effective sample size of an MCMC
Profile the calculation of the autocorrelation time
Profile the calculation of effective sample sizes
Reading a BEAST posterior
Package source: tracerer_2.0.1.tar.gz
Windows binaries: r-devel: tracerer_2.0.1.zip, r-release: tracerer_2.0.1.zip, r-oldrel: tracerer_2.0.1.zip
OS X binaries: r-release: tracerer_2.0.1.tgz, r-oldrel: tracerer_2.0.1.tgz
Old sources: tracerer archive

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