toxEval: Exploring Biological Relevance of Environmental Chemistry Observations

Data analysis package for estimating potential biological effects from chemical concentrations in environmental samples. Included are a set of functions to analyze, visualize, and organize measured concentration data as it relates to user-selected chemical-biological interaction benchmark data such as water quality criteria. The intent of these analyses is to develop a better understanding of the potential biological relevance of environmental chemistry data. Results can be used to prioritize which chemicals at which sites may be of greatest concern. These methods are meant to be used as a screening technique to predict potential for biological influence from chemicals that ultimately need to be validated with direct biological assays. A description of the analysis can be found in Blackwell et al. (2017) <doi:10.1021/acs.est.7b01613>.

Version: 1.0.4
Depends: R (≥ 3.0)
Imports: dplyr, tidyr, DT (≥ 0.1.24), leaflet (≥ 1.0.0), ggplot2 (≥ 3.0.0), magrittr, shiny, shinydashboard, RColorBrewer, readxl, tools, shinyAce, shinycssloaders
Suggests: rmarkdown, testthat, knitr
Published: 2019-03-22
Author: Laura DeCicco ORCID iD [aut, cre], Steven Corsi ORCID iD [aut], Daniel Villeneuve ORCID iD [aut], Brett Blackwell [aut], Gerald Ankley ORCID iD [aut], Alison Appling [rev] (Reviewed for USGS), Dalma Martinovic [rev] (Reviewed for USGS)
Maintainer: Laura DeCicco <ldecicco at usgs.gov>
BugReports: https://github.com/USGS-R/toxEval/issues
License: CC0
Copyright: This software is in the public domain because it contains materials that originally came from the United States Geological Survey, an agency of the United States Department of Interior. For more information, see the official USGS copyright policy at https://www.usgs.gov/visual-id/credit_usgs.html#copyright
NeedsCompilation: no
Citation: toxEval citation info
Materials: README NEWS
CRAN checks: toxEval results

Downloads:

Reference manual: toxEval.pdf
Vignettes: Introduction to toxEval
Prepare Data
Basic Workflow
Using Benchmarks
Shiny App
Package source: toxEval_1.0.4.tar.gz
Windows binaries: r-devel: toxEval_1.0.4.zip, r-release: toxEval_1.0.4.zip, r-oldrel: toxEval_1.0.4.zip
OS X binaries: r-release: toxEval_1.0.4.tgz, r-oldrel: toxEval_1.0.3.tgz
Old sources: toxEval archive

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