strataG: Summaries and Population Structure Analyses of Genetic Data

A toolkit for analyzing stratified population genetic data. Functions are provided for summarizing and checking loci (haploid, diploid, and polyploid), single stranded DNA sequences, calculating most population subdivision metrics, and running external programs such as structure and fastsimcoal. The package is further described in Archer et al (2016) <doi:10.1111/1755-0998.12559>.

Version: 2.0.2
Depends: R (≥ 3.2.0), apex, ape, adegenet
Imports: data.table, copula, DT, ggplot2, graphics, grid, gridExtra, Hmisc, methods, pegas, phangorn, RColorBrewer, Rcpp, shiny, shinyFiles, stats, survival (≥ 2.40.1), swfscMisc, utils
LinkingTo: Rcpp
Suggests: knitr, rmarkdown, testthat
Published: 2017-04-11
Author: Eric Archer [aut, cre], Paula Adams [aut], Brita Schneiders [aut], Sarina Fernandez [aut], Warren Asfazadour [aut]
Maintainer: Eric Archer <eric.archer at>
License: GPL-2 | GPL-3 [expanded from: GNU General Public License]
NeedsCompilation: yes
Citation: strataG citation info
Materials: README
CRAN checks: strataG results


Reference manual: strataG.pdf
Vignettes: 6. Installing External Programs
1. Creating and Manipulating gtypes Objects
4. Tests of Population Structure
5. Quality Assurance / Quality Control
3. Working With Sequences
2. By-Locus Summaries
Package source: strataG_2.0.2.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X El Capitan binaries: r-release: strataG_2.0.2.tgz
OS X Mavericks binaries: r-oldrel: strataG_2.0.2.tgz
Old sources: strataG archive

Reverse dependencies:

Reverse imports: skeleSim


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