speaq: Tools for Nuclear Magnetic Resonance (NMR) Spectra Alignment, Peak Based Processing, Quantitative Analysis and Visualizations

Makes Nuclear Magnetic Resonance spectroscopy (NMR spectroscopy) data analysis as easy as possible by only requiring a small set of functions to perform an entire analysis. 'speaq' offers the possibility of raw spectra alignment and quantitation but also an analysis based on features whereby the spectra are converted to peaks which are then grouped and turned into features. These features can be processed with any number of statistical tools either included in 'speaq' or available elsewhere on CRAN. More detail can be found in Vu et al. (2011) <doi:10.1186/1471-2105-12-405> and Beirnaert et al. (2018) <doi:10.1371/journal.pcbi.1006018>.

Version: 2.3.3
Depends: R (≥ 3.1.0)
Imports: MassSpecWavelet, mQTL, parallel, doSNOW, data.table, foreach, stats, cluster, utils, graphics, grDevices, ggplot2, gridExtra, reshape2, rvest, xml2, missForest, impute
Suggests: datasets, knitr, rmarkdown, grid, gridBase
Published: 2018-07-03
Author: Charlie Beirnaert, Trung Nghia Vu, Pieter Meysman, Kris Laukens and Dirk Valkenborg
Maintainer: Charlie Beirnaert <charlie_beirnaert at icloud.com>
License: Apache License 2.0
NeedsCompilation: no
Materials: NEWS
In views: ChemPhys
CRAN checks: speaq results

Downloads:

Reference manual: speaq.pdf
Vignettes: classic speaq vignette
speaq 2.0 function illustrations
Package source: speaq_2.3.3.tar.gz
Windows binaries: r-devel: speaq_2.3.3.zip, r-release: speaq_2.3.3.zip, r-oldrel: speaq_2.3.3.zip
OS X binaries: r-release: speaq_2.3.3.tgz, r-oldrel: speaq_2.3.3.tgz
Old sources: speaq archive

Reverse dependencies:

Reverse imports: Rnmr1D, specmine
Reverse suggests: ChemoSpec

Linking:

Please use the canonical form https://CRAN.R-project.org/package=speaq to link to this page.