neutralitytestr: Test for a Neutral Evolutionary Model in Cancer Sequencing Data

Package takes frequencies of mutations as reported by high throughput sequencing data from cancer and fits a theoretical neutral model of tumour evolution. Package outputs summary statistics and contains code for plotting the data and model fits. See Williams et al 2016 <doi:10.1038/ng.3489> and Williams et al 2017 <doi:10.1101/096305> for further details of the method.

Version: 0.0.1
Depends: R (≥ 3.4)
Imports: dplyr, ggplot2, scales, pracma, ggpmisc, cowplot
Suggests: knitr, rmarkdown, testthat
Published: 2018-04-11
Author: Marc Williams [aut, cre]
Maintainer: Marc Williams <marcjwilliams1 at gmail.com>
BugReports: https://github.com/marcjwilliams1/neutralitytestr/issues
License: MIT + file LICENSE
URL: https://github.com/marcjwilliams1/neutralitytestr
NeedsCompilation: no
Materials: README NEWS
CRAN checks: neutralitytestr results

Downloads:

Reference manual: neutralitytestr.pdf
Vignettes: neutralitytestr: Testing a neutral evolutionary model on cancer sequencing data
Package source: neutralitytestr_0.0.1.tar.gz
Windows binaries: r-prerel: neutralitytestr_0.0.1.zip, r-release: neutralitytestr_0.0.1.zip, r-oldrel: not available
OS X binaries: r-prerel: neutralitytestr_0.0.1.tgz, r-release: neutralitytestr_0.0.1.tgz

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