myTAI: Evolutionary Transcriptomics

Investigate the evolution of biological processes by capturing evolutionary signatures in transcriptomes (Drost et al. (2017) <doi:10.1093/bioinformatics/btx835>). The aim of this tool is to provide a transcriptome analysis environment for answering questions regarding the evolution of biological processes (Drost et al. (2016) <doi:10.1101/051565>).

Version: 0.7.0
Depends: R (≥ 3.1.1)
Imports: biomartr, Rcpp (≥ 0.12.0), nortest (≥ 1.0-2), fitdistrplus (≥ 1.0-2), parallel (≥ 3.1.1), foreach (≥ 1.4.2), doParallel (≥ 1.0.8), dplyr (≥ 0.3.0), RColorBrewer (≥ 1.1-2), taxize (≥ 0.6.0), methods (≥ 3.1.1), graphics (≥ 3.1.1), stats (≥ 3.1.1), grDevices (≥ 3.1.1), utils (≥ 3.1.1), reshape2 (≥ 1.4.1), ggplot2 (≥ 1.0.1), readr (≥ 0.2.2), tibble, scales, edgeR, gridExtra
LinkingTo: Rcpp
Suggests: knitr (≥ 1.6), rmarkdown (≥ 0.3.3), devtools (≥ 1.6.1), testthat (≥ 0.9.1), mgcv
Published: 2018-04-11
Author: Hajk-Georg Drost ORCID iD [aut, cre]
Maintainer: Hajk-Georg Drost <hgd23 at cam.ac.uk>
BugReports: https://github.com/HajkD/myTAI/issues
License: GPL-3
URL: https://github.com/HajkD/myTAI
NeedsCompilation: yes
Citation: myTAI citation info
Materials: README NEWS
CRAN checks: myTAI results

Downloads:

Reference manual: myTAI.pdf
Vignettes: Advanced Phylotranscriptomics Analyses
Enrichment Analyses
Gene Expression Analysis
Intermediate Phylotranscriptomics Analyses
Introduction to the myTAI package
Taxonomic Information
Package source: myTAI_0.7.0.tar.gz
Windows binaries: r-prerel: myTAI_0.7.0.zip, r-release: myTAI_0.7.0.zip, r-oldrel: myTAI_0.7.0.zip
OS X binaries: r-prerel: myTAI_0.7.0.tgz, r-release: myTAI_0.7.0.tgz
Old sources: myTAI archive

Linking:

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