metaMix: Bayesian Mixture Analysis for Metagenomic Community Profiling

Resolves complex metagenomic mixtures by analysing deep sequencing data, using a mixture model based approach. The use of parallel Monte Carlo Markov chains for the exploration of the species space enables the identification of the set of species more likely to contribute to the mixture.

Version: 0.2
Depends: R (≥ 3.0.1)
Imports: data.table (≥ 1.9.2), Matrix, gtools, Rmpi, ggplot2
Suggests: knitr
Published: 2015-03-15
Author: Sofia Morfopoulou
Maintainer: Sofia Morfopoulou <sofia.morfopoulou.10 at ucl.ac.uk>
License: GPL-3
NeedsCompilation: yes
SystemRequirements: Open MPI (>=1.4.3)
CRAN checks: metaMix results

Downloads:

Reference manual: metaMix.pdf
Vignettes: metaMix User Guide
Package source: metaMix_0.2.tar.gz
Windows binaries: r-devel: metaMix_0.2.zip, r-release: metaMix_0.2.zip, r-oldrel: metaMix_0.2.zip
OS X binaries: r-release: not available, r-oldrel: not available
Old sources: metaMix archive

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