ioncopy: Calling Copy Number Alterations in Amplicon Sequencing Data

Method for the calculation of copy numbers and calling of copy number alterations. The algorithm uses coverage data from amplicon sequencing of a sample cohort as input. The method includes significance assessment, correction for multiple testing and does not depend on normal DNA controls. Budczies (2016 Mar 15) <doi:10.18632/oncotarget.7451>.

Version: 2.2.2
Imports: shiny, zip
Published: 2020-08-11
DOI: 10.32614/CRAN.package.ioncopy
Author: Jan Budczies, Eva Romanovsky
Maintainer: Jan Budczies <jan.budczies at>
License: GPL-3
NeedsCompilation: no
In views: Omics
CRAN checks: ioncopy results


Reference manual: ioncopy.pdf


Package source: ioncopy_2.2.2.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): ioncopy_2.2.2.tgz, r-oldrel (arm64): ioncopy_2.2.2.tgz, r-release (x86_64): ioncopy_2.2.2.tgz, r-oldrel (x86_64): ioncopy_2.2.2.tgz
Old sources: ioncopy archive


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