insect: Informatic Sequence Classification Trees

Provides a bioinformatics pipeline for DNA meta-barcoding analysis, including functions for sequence parsing, demultiplexing, quality filtering and probabilistic taxon assignment with informatic sequence classification trees. See Wilkinson et al (2018) <doi:10.7287/peerj.preprints.26812v1>.

Version: 1.0.0
Imports: ape (≥ 3.0.0), aphid (≥ 1.1.0), kmer (≥ 1.0.1), openssl, phylogram (≥ 2.0.0), stats, utils, xml2
Suggests: knitr, rmarkdown, testthat
Published: 2018-05-16
Author: Shaun Wilkinson [aut, cre]
Maintainer: Shaun Wilkinson <shaunpwilkinson at gmail.com>
BugReports: http://github.com/shaunpwilkinson/insect/issues
License: GPL-3
URL: http://github.com/shaunpwilkinson/insect
NeedsCompilation: no
Citation: insect citation info
Materials: README
CRAN checks: insect results

Downloads:

Reference manual: insect.pdf
Vignettes: Introduction to the insect package
Package source: insect_1.0.0.tar.gz
Windows binaries: r-devel: insect_1.0.0.zip, r-release: insect_1.0.0.zip, r-oldrel: insect_1.0.0.zip
OS X binaries: r-release: insect_1.0.0.tgz, r-oldrel: insect_1.0.0.tgz

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