genBaRcode: Analysis and Visualization Tools for Genetic Barcode Data

Provides the necessary functions to identify and extract a selection of already available barcode constructs (Cornils, K. et al. (2014) <doi:10.1093/nar/gku081>) and freely choosable barcode designs from next generation sequence (NGS) data. Furthermore, it offers the possibility to account for sequence errors, the calculation of barcode similarities and provides a variety of visualisation tools (Thielecke, L. et al. (2017) <doi:10.1038/srep43249>).

Version: 1.0.0
Depends: R (≥ 3.4.0)
Imports: methods, Biostrings, RColorBrewer, ShortRead, ape, ggnetwork, ggplot2, igraph, network, phangorn, stringdist, visNetwork, reshape2, S4Vectors, shiny
Suggests: testthat
Published: 2017-09-21
Author: Lars Thielecke
Maintainer: Lars Thielecke <lars.thielecke at tu-dresden.de>
License: LGPL-2 | LGPL-2.1 | LGPL-3 [expanded from: LGPL]
NeedsCompilation: no
CRAN checks: genBaRcode results

Downloads:

Reference manual: genBaRcode.pdf
Package source: genBaRcode_1.0.0.tar.gz
Windows binaries: r-prerel: genBaRcode_1.0.0.zip, r-release: genBaRcode_1.0.0.zip, r-oldrel: not available
OS X binaries: r-prerel: not available, r-release: genBaRcode_1.0.0.tgz

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