episcan: Scan Pairwise Epistasis

Searching genomic interactions with linear/logistic regression in a high-dimensional dataset is a time-consuming task. This package provides some efficient ways to scan epistasis in genome-wide interaction studies (GWIS). Both case-control status (binary outcome) and quantitative phenotype (continuous outcome) are supported (the main references: 1. Kam-Thong, T., D. Czamara, K. Tsuda, K. Borgwardt, C. M. Lewis, A. Erhardt-Lehmann, B. Hemmer, et al. (2011). <doi:10.1038/ejhg.2010.196>. 2. Kam-Thong, T., B. Pütz, N. Karbalai, B. Müller-Myhsok, and K. Borgwardt. (2011). <doi:10.1093/bioinformatics/btr218>.)

Version: 0.0.1
Depends: R (≥ 3.5.0)
Suggests: testthat, knitr, rmarkdown
Published: 2018-09-14
Author: Beibei Jiang and Benno Pütz
Maintainer: Beibei Jiang <beibei_jiang at psych.mpg.de>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
CRAN checks: episcan results

Downloads:

Reference manual: episcan.pdf
Vignettes: episcan
Package source: episcan_0.0.1.tar.gz
Windows binaries: r-devel: episcan_0.0.1.zip, r-release: episcan_0.0.1.zip, r-oldrel: episcan_0.0.1.zip
OS X binaries: r-release: episcan_0.0.1.tgz, r-oldrel: episcan_0.0.1.tgz

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