effectR: Predicts Oomycete Effectors

Predicts cytoplasmic effector proteins using genomic data by searching for motifs of interest using regular expression searches and hidden Markov models (HMM) based in Haas et al. (2009) <doi:10.1038/nature08358>.

Version: 1.0.1
Depends: R (≥ 3.4.0)
Imports: seqinr (≥ 3.3.6), ggplot2 (≥ 2.2.1), shiny, reshape2, utils, viridis
Suggests: knitr, rmarkdown, testthat
Published: 2018-04-25
Author: Javier Tabima [aut, cre], Niklaus J. Grunwald [ths]
Maintainer: Javier Tabima <tabimaj at oregonstate.edu>
License: GPL-2 | GPL-3
NeedsCompilation: no
Materials: README NEWS
CRAN checks: effectR results

Downloads:

Reference manual: effectR.pdf
Vignettes: effectR: An R package to call oomycete effectors
Package source: effectR_1.0.1.tar.gz
Windows binaries: r-devel: effectR_1.0.1.zip, r-release: effectR_1.0.1.zip, r-oldrel: effectR_1.0.1.zip
OS X binaries: r-release: effectR_1.0.1.tgz, r-oldrel: effectR_1.0.1.tgz
Old sources: effectR archive

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