detrendr: Detrend Images

Detrend fluorescence microscopy image series for fluorescence fluctuation and correlation spectroscopy ('FCS' and 'FFS') analysis. This package contains functionality published in a 2016 paper <doi:10.1093/bioinformatics/btx434> but it has been extended since then with the Robin Hood algorithm and thus contains unpublished work.

Version: 0.6.0
Imports: Rcpp, RcppParallel, parallel, checkmate, magrittr, dplyr, foreach, doParallel, iterators, purrr, ijtiff (≥ 1.5.0), autothresholdr (≥ 1.3.0), rlang, stringr, filesstrings (≥ 3.0.0), plyr, glue, sigmoid, matrixStats, stringi, assertthat
LinkingTo: Rcpp, RcppParallel
Suggests: testthat, knitr, rmarkdown, covr, abind, lattice, pacman, tidyr, graphics, gridExtra, arrayhelpers, ore (≥ 1.4.0), clipr, styler, MASS, mgcv, spelling
Published: 2018-11-09
Author: Rory Nolan ORCID iD [aut, cre], Luis Alvarez ORCID iD [ctb, cph], Sergi Padilla-Parra ORCID iD [ctb, ths, cph]
Maintainer: Rory Nolan <rorynoolan at>
License: BSD_3_clause + file LICENSE
NeedsCompilation: yes
SystemRequirements: GNU make
Language: en-US
Citation: detrendr citation info
Materials: NEWS
CRAN checks: detrendr results


Reference manual: detrendr.pdf
Vignettes: Batch mode
Detrending single images
Package source: detrendr_0.6.0.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X binaries: r-release: detrendr_0.6.0.tgz, r-oldrel: detrendr_0.6.0.tgz
Old sources: detrendr archive

Reverse dependencies:

Reverse imports: nandb


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