cuperdec: Cumulative Percent Decay Curve Generator

Calculates and visualises cumulative percent 'decay' curves, which are typically calculated from metagenomic taxonomic profiles. These can be used to estimate the level of expected 'endogenous' taxa at different abundance levels retrieved from metagenomic samples, when comparing to samples of known sampling site or source.

Version: 1.0.0
Depends: R (≥ 3.5.0)
Imports: dplyr, ggplot2, magrittr, readr, rlang, tidyr
Suggests: knitr, rmarkdown, testthat
Published: 2021-04-07
Author: James A. Fellows Yates ORCID iD [aut, cre]
Maintainer: James A. Fellows Yates <jfy133 at gmail.com>
BugReports: https://github.com/jfy133/cuperdec/issues
License: MIT + file LICENSE
URL: https://github.com/jfy133/cuperdec
NeedsCompilation: no
Language: en-GB
Citation: cuperdec citation info
Materials: README NEWS
CRAN checks: cuperdec results

Downloads:

Reference manual: cuperdec.pdf
Vignettes: Introduction to cuperdec
Package source: cuperdec_1.0.0.tar.gz
Windows binaries: r-devel: cuperdec_1.0.0.zip, r-release: cuperdec_1.0.0.zip, r-oldrel: cuperdec_1.0.0.zip
macOS binaries: r-release: cuperdec_1.0.0.tgz, r-oldrel: cuperdec_1.0.0.tgz

Linking:

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