cosmicsig: Mutational Signatures from COSMIC (Catalogue of Somatic Mutations in Cancer)

A data package with 2 main package variables: 'signature' and 'etiology'. The 'signature' variable contains the latest mutational signature profiles released on COSMIC <https://cancer.sanger.ac.uk/signatures/> for 4 mutation types: * single base substitutions in the context of preceding and following bases, * Strand bias single base substitutions: single base substitutions from transcribed regions, that take into consideration the the transcribed versus non-transcribed strand, * Doublet base substitutions, and * Small insertions and deletions. The 'etiology' variable provides the known or hypothesized causes of signatures. 'cosmicsig' stands for COSMIC signatures. Please run ?'cosmicsig' for more information.

Version: 1.0.7
Depends: R (≥ 3.5)
Suggests: testthat (≥ 3.0.0), ICAMS, usethis
Published: 2021-12-20
Author: Steven Rozen ORCID iD [aut, cre], Nanhai Jiang ORCID iD [aut]
Maintainer: Steven Rozen <steverozen at pm.me>
BugReports: https://github.com/Rozen-Lab/cosmicsig/issues
License: GPL-3
URL: https://github.com/Rozen-Lab/cosmicsig
NeedsCompilation: no
Language: en-US
Citation: cosmicsig citation info
Materials: README NEWS
CRAN checks: cosmicsig results

Documentation:

Reference manual: cosmicsig.pdf

Downloads:

Package source: cosmicsig_1.0.7.tar.gz
Windows binaries: r-devel: cosmicsig_1.0.7.zip, r-release: cosmicsig_1.0.7.zip, r-oldrel: cosmicsig_1.0.7.zip
macOS binaries: r-release (arm64): cosmicsig_1.0.7.tgz, r-release (x86_64): cosmicsig_1.0.7.tgz, r-oldrel: cosmicsig_1.0.7.tgz

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