coglasso: Collaborative Graphical Lasso - Multi-Omics Network Reconstruction

Reconstruct networks from multi-omics data sets with the collaborative graphical lasso (coglasso) algorithm described in Albanese, A., Kohlen, W., and Behrouzi, P. (2024) <doi:10.48550/arXiv.2403.18602>. Build multiple networks using the coglasso() function, select the best one with stars_coglasso().

Version: 1.0.2
Depends: R (≥ 2.10)
Imports: Matrix, Rcpp (≥ 1.0.11), stats, utils
LinkingTo: Rcpp, RcppEigen
Suggests: igraph, knitr, rmarkdown, testthat (≥ 3.0.0)
Published: 2024-04-03
Author: Alessio Albanese ORCID iD [aut, cre, cph], Pariya Behrouzi ORCID iD [aut]
Maintainer: Alessio Albanese <alessio.albanese at wur.nl>
BugReports: https://github.com/DrQuestion/coglasso/issues
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: https://github.com/DrQuestion/coglasso, https://drquestion.github.io/coglasso/
NeedsCompilation: yes
Citation: coglasso citation info
Materials: README NEWS
CRAN checks: coglasso results

Documentation:

Reference manual: coglasso.pdf
Vignettes: Reconstructing mult-omics networks with coglasso
Reproduction of manuscript's results

Downloads:

Package source: coglasso_1.0.2.tar.gz
Windows binaries: r-prerel: coglasso_1.0.2.zip, r-release: coglasso_1.0.2.zip, r-oldrel: coglasso_1.0.2.zip
macOS binaries: r-prerel (arm64): coglasso_1.0.2.tgz, r-release (arm64): coglasso_1.0.2.tgz, r-oldrel (arm64): coglasso_1.0.2.tgz, r-prerel (x86_64): coglasso_1.0.2.tgz, r-release (x86_64): coglasso_1.0.2.tgz

Linking:

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