bedr: Genomic Region Processing using Tools Such as 'BEDTools', 'BEDOPS' and 'Tabix'

Genomic regions processing using open-source command line tools such as 'BEDTools', 'BEDOPS' and 'Tabix'. These tools offer scalable and efficient utilities to perform genome arithmetic e.g indexing, formatting and merging. bedr API enhances access to these tools as well as offers additional utilities for genomic regions processing.

Version: 1.0.4
Depends: R (≥ 3.0)
Imports: testthat (≥ 0.7.1), VennDiagram (≥ 1.6.4), data.table (≥ 1.8.11), R.utils (≥ 2.0.2), yaml (≥ 2.1.10), parallel, grid
Suggests: knitr (≥ 1.4), rmarkdown (≥ 0.9.5)
Published: 2017-10-13
Author: Daryl Waggott [aut], Syed Haider [aut], Emilie Lalonde [ctb], Clement Fung [ctb], Paul C. Boutros [aut, cre, cph]
Maintainer: Paul C. Boutros <Paul.Boutros at oicr.on.ca>
License: GPL-2
NeedsCompilation: no
SystemRequirements: Preferred genomic operations engine: 'BEDTools', 'BEDOPS' and 'Tabix'.
Materials: NEWS
CRAN checks: bedr results

Downloads:

Reference manual: bedr.pdf
Vignettes: bedr
Package source: bedr_1.0.4.tar.gz
Windows binaries: r-devel: bedr_1.0.4.zip, r-release: bedr_1.0.4.zip, r-oldrel: bedr_1.0.4.zip
OS X binaries: r-release: bedr_1.0.4.tgz, r-oldrel: bedr_1.0.4.tgz
Old sources: bedr archive

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