banffIT: Automatize Diagnosis Standardized Assignation Using the Banff Classification

Assigns standardized diagnoses using the Banff Classification (Category 1 to 6 diagnoses, including Acute and Chronic active T-cell mediated rejection as well as Active, Chronic active, and Chronic antibody mediated rejection). The main function considers a minimal dataset containing biopsies information in a specific format (described by a data dictionary), verifies its content and format (based on the data dictionary), assigns diagnoses, and creates a summary report. The package is developed on the reference guide to the Banff classification of renal allograft pathology Roufosse C, Simmonds N, Clahsen-van Groningen M, et al. A (2018) <doi:10.1097/TP.0000000000002366>. The full description of the Banff classification is available at <>.

Version: 1.0.0
Depends: R (≥ 3.4)
Imports: dplyr (≥ 1.1.0), rlang, tools, utils, crayon, stringr, fs, lubridate, tidyr, fabR, madshapR
Suggests: knitr, rmarkdown, usethis
Published: 2024-05-08
DOI: 10.32614/CRAN.package.banffIT
Author: Guillaume Fabre ORCID iD [aut, cre], Ruth Sapir-Pichhadze [fnd, cph, ctb], Samuel El Bouzaïdi Tiali [ctb], Jérôme Laforme [ctb], Tina Wey [ctb]
Maintainer: Guillaume Fabre <guijoseph.fabre at>
License: GPL-3
NeedsCompilation: no
Language: en-US
Materials: README NEWS
CRAN checks: banffIT results


Reference manual: banffIT.pdf
Vignettes: banffIT-vignette


Package source: banffIT_1.0.0.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): banffIT_1.0.0.tgz, r-oldrel (arm64): banffIT_1.0.0.tgz, r-release (x86_64): banffIT_1.0.0.tgz, r-oldrel (x86_64): banffIT_1.0.0.tgz


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