SubVis: Visual Exploration of Protein Alignments Resulting from Multiple Substitution Matrices

Substitution matrices are important parameters in protein alignment algorithms. These matrices represent the likelihood that an amino acid will be substituted for another during mutation. This tool allows users to apply predefined and custom matrices and then explore the resulting alignments with interactive visualizations. 'SubVis' requires the availability of a web browser.

Version: 2.0.2
Depends: R (≥ 3.3.0), shiny, Biostrings
Suggests: knitr, rmarkdown
Published: 2017-05-23
DOI: 10.32614/CRAN.package.SubVis
Author: Scott Barlowe
Maintainer: Scott Barlowe <sabarlowe at>
License: GPL-3
NeedsCompilation: no
CRAN checks: SubVis results


Reference manual: SubVis.pdf
Vignettes: SubVis


Package source: SubVis_2.0.2.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): SubVis_2.0.2.tgz, r-oldrel (arm64): SubVis_2.0.2.tgz, r-release (x86_64): SubVis_2.0.2.tgz, r-oldrel (x86_64): SubVis_2.0.2.tgz
Old sources: SubVis archive


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