SCpubr: Generate Publication Ready Visualizations of Single Cell Transcriptomics Data

A system that provides a streamlined way of generating publication ready plots for known Single-Cell transcriptomics data in a “publication ready” format. This is, the goal is to automatically generate plots with the highest quality possible, that can be used right away or with minimal modifications for a research article.

Version: 1.0.4
Depends: R (≥ 4.0.0)
Suggests: assertthat, circlize, colorspace, covr, ComplexHeatmap, dplyr, ggbeeswarm, ggdist, ggExtra, ggplot2, ggplotify, ggrastr, ggrepel, ggridges, ggsignif, graphics, magrittr, Nebulosa, patchwork, pheatmap, plyr, rlang, scales, scattermore, Seurat, tibble, tidyr, forcats, infercnv, knitr, Matrix, purrr, qpdf, rgdal, rjags, rmarkdown, stringr, svglite, ggalluvial, testthat (≥ 3.0.0), viridis, UCell (≥ 2.0)
Published: 2022-11-07
Author: Enrique Blanco-Carmona ORCID iD [cre, aut]
Maintainer: Enrique Blanco-Carmona <scpubr at gmail.com>
BugReports: https://github.com/enblacar/SCpubr/issues/
License: GPL-3
URL: https://github.com/enblacar/SCpubr/, https://enblacar.github.io/SCpubr-book/
NeedsCompilation: no
Citation: SCpubr citation info
Materials: README NEWS
CRAN checks: SCpubr results

Documentation:

Reference manual: SCpubr.pdf
Vignettes: reference_manual

Downloads:

Package source: SCpubr_1.0.4.tar.gz
Windows binaries: r-devel: SCpubr_1.0.4.zip, r-release: SCpubr_1.0.4.zip, r-oldrel: SCpubr_1.0.4.zip
macOS binaries: r-release (arm64): SCpubr_1.0.4.tgz, r-oldrel (arm64): SCpubr_1.0.4.tgz, r-release (x86_64): SCpubr_1.0.4.tgz, r-oldrel (x86_64): SCpubr_1.0.4.tgz
Old sources: SCpubr archive

Linking:

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