Ravages: Rare Variant Analysis and Genetic Simulations

Rare variant association tests: burden tests (Bocher et al. 2019 <doi:10.1002/gepi.22210>) and the Sequence Kernel Association Test (Bocher et al. 2021 <doi:10.1038/s41431-020-00792-8>) in the whole genome; and genetic simulations.

Version: 1.1.2
Depends: R (≥ 3.5.0), Rcpp, RcppParallel, methods, gaston, mlogit (≥ 1.1-0)
Imports: Formula, dfidx, parallel, bedr, curl, data.table
LinkingTo: Rcpp, RcppParallel, RcppEigen, gaston, BH
Suggests: knitr, rmarkdown
Published: 2023-02-01
Author: Ozvan Bocher and Hervé Perdry
Maintainer: Ozvan Bocher <bocherozvan at gmail.com>
License: GPL-3
NeedsCompilation: yes
Materials: NEWS
CRAN checks: Ravages results

Documentation:

Reference manual: Ravages.pdf
Vignettes: "Ravages_Simulations"
Ravages_Association

Downloads:

Package source: Ravages_1.1.2.tar.gz
Windows binaries: r-devel: Ravages_1.1.2.zip, r-release: Ravages_1.1.1.zip, r-oldrel: Ravages_1.1.2.zip
macOS binaries: r-release (arm64): Ravages_1.1.2.tgz, r-oldrel (arm64): Ravages_1.1.2.tgz, r-release (x86_64): Ravages_1.1.2.tgz, r-oldrel (x86_64): Ravages_1.1.2.tgz
Old sources: Ravages archive

Linking:

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