REIDS: Random Effects for the Identification of Differential Splicing

Contains the REIDS model presented in Van Moerbeke et al (2017) <doi:10.1186/s12859-017-1687-8> for the detection of alternative splicing. The method is extended by incorporating junction information for the assessment of alternative splicing. The vignette introduces the model and shows an example work flow.

Version: 0.1.0
Depends: R (≥ 2.10), aroma.affymetrix, aroma.core, GenomeGraphs, biomaRt
Imports: data.table, RColorBrewer, MCMCpack, lmtest, methods
Published: 2018-07-30
Author: Marijke Van Moerbeke
Maintainer: Marijke Van Moerbeke <marijke.vanmoerbeke at uhasselt.be>
License: GPL-3
NeedsCompilation: no
CRAN checks: REIDS results

Downloads:

Reference manual: REIDS.pdf
Vignettes: REIDSvignette
Package source: REIDS_0.1.0.tar.gz
Windows binaries: r-devel: REIDS_0.1.0.zip, r-release: REIDS_0.1.0.zip, r-oldrel: REIDS_0.1.0.zip
OS X binaries: r-release: not available, r-oldrel: REIDS_0.0.1.tgz
Old sources: REIDS archive

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