Internal reorganisation, moving the Shiny code to inst/shiny/app.R.
launchApp() is now the main launching function, with runKLINK() as an alias.
Fixes a minor regression error in the previous version.
New button “Mask” for downloading a masked version of the dataset.
Reading/writing .fam files is now handled by the new package pedFamilias(), which has been split out from forrel.
Added R option KLINK.debug which can be set to TRUE for debugging (only when running KLINK from R).
Use (experimental) autoScale option in pedigree plots.
Minor internal tweaks and bug fixes.
Although KLINK is primarily a Shiny app, the package now documents and exports the main functions, enabling analysis in R as well.
Added new dataset paternity, with simulated data for a paternity case (including a mutation).
Improved formatting in output Excel document.
Simplified code in sync with recent pedsuite updates. The plots may appear slightly modified.
Add karyogram showing marker positions.
Add sheets “Unlinked” and “Linked only” in excel output.
Tweaked button placements.
New button letting the user choose fallback mutation model (applied when a model specified in the input file fails for whatever reason).
Fixed a couple of minor bugs
Added a NEWS.md file to track changes to the package.
pedtools version 2.2.0 is now required.
If the pedigrees prohibit arbitrary lumping, all complex mutation models are replaced with a simpler model. A notification to this effect is added when loading the file. This behaviour is currently triggered if either pedigree has an untyped nonfounder.