Hmsc: Hierarchical Model of Species Communities

Hierarchical Modelling of Species Communities (HMSC) is a model-based approach for analyzing community ecological data. This package implements it in the Bayesian framework with Gibbs Markov chain Monte Carlo (MCMC) sampling.

Version: 3.0-2
Depends: R (≥ 3.0.2), coda
Imports: abind, ape, BayesLogit, fields, FNN, ggplot2, MASS, Matrix, MCMCpack, methods, mvtnorm, nnet, parallel, pdist, pROC, phytools, statmod, truncnorm
Suggests: R.rsp, testthat, corrplot
Published: 2019-10-13
Author: Gleb Tikhonov [aut], Otso Ovaskainen ORCID iD [aut, cre], Jari Oksanen [aut], Melinda de Jonge [aut], Oystein Opedal [aut], Tad Dallas [aut]
Maintainer: Otso Ovaskainen <otso.ovaskainen at helsinki.fi>
BugReports: https://github.com/hmsc-r/HMSC/issues
License: GPL-3 | file LICENSE
URL: https://www.helsinki.fi/en/researchgroups/statistical-ecology/hmsc
NeedsCompilation: no
Materials: README
CRAN checks: Hmsc results

Downloads:

Reference manual: Hmsc.pdf
Vignettes: Getting started with HMSC-R: univariate models
Getting started with HMSC-R: low-dimensional multivariate models
Getting started with HMSC-R: high-dimensional multivariate models
Getting started with HMSC-R: spatial models
Package source: Hmsc_3.0-2.tar.gz
Windows binaries: r-devel: Hmsc_3.0-2.zip, r-devel-gcc8: Hmsc_3.0-2.zip, r-release: Hmsc_3.0-2.zip, r-oldrel: Hmsc_3.0-2.zip
OS X binaries: r-release: Hmsc_3.0-2.tgz, r-oldrel: Hmsc_3.0-2.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=Hmsc to link to this page.