CeRNASeek: Identification and Analysis of ceRNA Regulation

Provides several functions to identify and analyse miRNA sponge, including popular methods for identifying miRNA sponge interactions, two types of global ceRNA regulation prediction methods and four types of context-specific prediction methods( Li Y et al.(2017) <doi:10.1093/bib/bbx137>), which are based on miRNA-messenger RNA regulation alone, or by integrating heterogeneous data, respectively. In addition, For predictive ceRNA relationship pairs, this package provides several downstream analysis algorithms, including regulatory network analysis and functional annotation analysis, as well as survival prognosis analysis based on expression of ceRNA ternary pair.

Version: 2.1
Depends: R (≥ 3.1.0)
Imports: gtools , igraph, survival, parallel
Published: 2019-07-20
Author: Mengying Zhang,Yongsheng Li,Juan Xu*,Xia Li*
Maintainer: Mengying Zhang <zhangmengying at hrbmu.edu.cn>
License: GPL-3
NeedsCompilation: no
CRAN checks: CeRNASeek results

Downloads:

Reference manual: CeRNASeek.pdf
Package source: CeRNASeek_2.1.tar.gz
Windows binaries: r-devel: CeRNASeek_2.1.zip, r-devel-gcc8: CeRNASeek_2.1.zip, r-release: CeRNASeek_2.1.zip, r-oldrel: CeRNASeek_2.1.zip
OS X binaries: r-release: CeRNASeek_2.1.tgz, r-oldrel: CeRNASeek_2.1.tgz
Old sources: CeRNASeek archive

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