Bioi: Biological Image Analysis

Single linkage clustering and connected component analyses are often performed on biological images. 'Bioi' provides a set of functions for performing these tasks. This functionality is implemented in several key functions that can extend to from 1 to many dimensions. The single linkage clustering method implemented here can be used on n-dimensional data sets, while connected component analyses are limited to 3 or fewer dimensions.

Version: 0.2.9
Depends: R (≥ 3.3.0)
Imports: Rcpp (≥ 0.12.13), assertthat (≥ 0.2.0), dplyr (≥ 0.7.4), igraph
LinkingTo: Rcpp
Suggests: knitr, rmarkdown, ggplot2, testthat (≥ 2.0.0)
Published: 2018-01-22
Author: Zachary Colburn
Maintainer: Zachary Colburn <zcolburn at>
License: GPL-3
NeedsCompilation: yes
Materials: README NEWS
CRAN checks: Bioi results


Reference manual: Bioi.pdf
Vignettes: Bioi
Package source: Bioi_0.2.9.tar.gz
Windows binaries: r-prerel:, r-release:, r-oldrel:
OS X binaries: r-prerel: Bioi_0.2.9.tgz, r-release: Bioi_0.2.9.tgz
Old sources: Bioi archive


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