Minor update to plotFlagSummary to allow individual species maps to get updated.
Update to atlasDownloader from mjwestgate to work with galah version 2.0.0
Minor update to the bee taxonomy file (29th November 2023), especially in regards to a few species that were getting associated with genus-only identifications. In particular, users who have downloaded version 1 of the dataset should be careful with the following species: Coelioxys texanus, Lasioglossum albipenne, Megachile brevis, and Xylocopa virginica. Likely the verbatimScientificName column coudl be filtered to remove these issues with something like: beeData %>% dplyr::filter(verbatimScientificName %in% c(“Coelioxys”, “Lasioglossum”, “Megachile”, “Xylocopa”)). Thanks to Angela Nava-Bolaños for identifying this issue.
ComplexHeatmap has been moved from imports to suggests and chordDiagramR will now ask a user if they want to install BiocManager and ComplexHeatmap (only if each is not already installed) before completing the function. This will simplify the installation process greatly.
A new readr function has been added (readr_VicWam), which reads data from the combined Victorian and Western Australian Museums in Australia.
A typo and potential pitfall has been fixed in countryOutliers where sometimes .sea records were not flagged and where NA record counts for .countryOutlier were not stated in the text output.
How users access the taxonomy and checklist files were slightly modified to include better warnings to help with troubleshooting as well as specific file-path operations for Windows machines.
jbd_coordCountryInconsistent was updated to better capture mismatched countries by using more columns to match.
Tests and workflows were updated in accordingly.