APackOfTheClones: Visualization of T-Cell Clonal Expansion

Visualize T-cell clonal expansion via circle-packing. 'APackOfTheClones' can integrate single-cell RNA sequencing and T-cell receptor libraries from the 10X genomics Single Cell Immune Profiling and Cell Ranger pipeline, to produce a simple, publication-ready visualization of the clonal expansion. The method was originally implemented by Murray Christian and Ben Murrell in the following immunology study: Ma et al. (2021) <doi:10.1126/sciimmunol.abg6356>.

Version: 0.1.2
Depends: R (≥ 3.5.0)
Imports: data.table, dplyr, ggforce, ggplot2, grDevices, hash, R6, rlang, Seurat, stats, utils
Suggests: covr, knitr, rmarkdown, spelling, testthat (≥ 3.0.0), vdiffr
Published: 2023-05-09
Author: Qile Yang [cre, aut, cph]
Maintainer: Qile Yang <qile0317 at gmail.com>
BugReports: https://github.com/Qile0317/APackOfTheClones/issues/
License: MIT + file LICENSE
URL: https://qile0317.github.io/APackOfTheClones/
NeedsCompilation: no
Language: en-US
Citation: APackOfTheClones citation info
Materials: README NEWS
CRAN checks: APackOfTheClones results


Reference manual: APackOfTheClones.pdf


Package source: APackOfTheClones_0.1.2.tar.gz
Windows binaries: r-devel: APackOfTheClones_0.1.2.zip, r-release: APackOfTheClones_0.1.2.zip, r-oldrel: APackOfTheClones_0.1.2.zip
macOS binaries: r-release (arm64): APackOfTheClones_0.1.2.tgz, r-oldrel (arm64): APackOfTheClones_0.1.2.tgz, r-release (x86_64): APackOfTheClones_0.1.2.tgz, r-oldrel (x86_64): APackOfTheClones_0.1.2.tgz


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