CRAN Package Check Results for Package tidysdm

Last updated on 2024-06-22 03:49:44 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.9.4 31.12 675.99 707.11 ERROR
r-devel-linux-x86_64-debian-gcc 0.9.4 21.12 499.31 520.43 ERROR
r-devel-linux-x86_64-fedora-clang 0.9.4 991.53 ERROR
r-devel-linux-x86_64-fedora-gcc 0.9.4 910.02 ERROR
r-devel-windows-x86_64 0.9.4 25.00 512.00 537.00 OK
r-patched-linux-x86_64 0.9.4 38.55 733.21 771.76 OK
r-release-linux-x86_64 0.9.4 23.05 733.41 756.46 OK
r-release-macos-arm64 0.9.4 241.00 OK
r-release-macos-x86_64 0.9.4 367.00 OK
r-release-windows-x86_64 0.9.4 26.00 529.00 555.00 OK
r-oldrel-macos-arm64 0.9.4 222.00 OK
r-oldrel-macos-x86_64 0.9.4 378.00 OK
r-oldrel-windows-x86_64 0.9.4 34.00 702.00 736.00 OK

Check Details

Version: 0.9.4
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘a0_tidysdm_overview.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/unnamed-chunk-3-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 24420 bytes Input file size = 24522 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18497 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18497 Output IDAT size = 18497 bytes (5923 bytes decrease) Output file size = 18575 bytes (5947 bytes = 24.25% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/plot_thin_by_cell-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 26290 bytes Input file size = 26404 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19760 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19760 Output IDAT size = 19760 bytes (6530 bytes decrease) Output file size = 19838 bytes (6566 bytes = 24.87% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/plot_thin_by_dist-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 23579 bytes Input file size = 23681 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17846 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17846 Output IDAT size = 17846 bytes (5733 bytes decrease) Output file size = 17924 bytes (5757 bytes = 24.31% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/plot_sample_pseudoabs-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 52787 bytes Input file size = 52937 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 38441 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 38441 Output IDAT size = 38441 bytes (14346 bytes decrease) Output file size = 38519 bytes (14418 bytes = 27.24% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/unnamed-chunk-7-1.png 672x1056 pixels, 3x8 bits/pixel, RGB Input IDAT size = 116119 bytes Input file size = 116365 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102058 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102058 Output IDAT size = 102058 bytes (14061 bytes decrease) Output file size = 102136 bytes (14229 bytes = 12.23% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/unnamed-chunk-10-1.png 672x768 pixels, 3x8 bits/pixel, RGB Input IDAT size = 138515 bytes Input file size = 138785 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 101422 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 101422 Output IDAT size = 101422 bytes (37093 bytes decrease) Output file size = 101500 bytes (37285 bytes = 26.87% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/training_cv-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 72790 bytes Input file size = 72964 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 63020 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 63020 Output IDAT size = 63020 bytes (9770 bytes decrease) Output file size = 63098 bytes (9866 bytes = 13.52% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/autoplot_models-1.png 672x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 32170 bytes Input file size = 32284 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25299 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25299 Output IDAT size = 25299 bytes (6871 bytes decrease) Output file size = 25377 bytes (6907 bytes = 21.39% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/autoplot_ens-1.png 672x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28366 bytes Input file size = 28480 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22741 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22741 Output IDAT size = 22741 bytes (5625 bytes decrease) Output file size = 22819 bytes (5661 bytes = 19.88% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/plot_present-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 31387 bytes Input file size = 31501 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26396 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26396 Output IDAT size = 26396 bytes (4991 bytes decrease) Output file size = 26474 bytes (5027 bytes = 15.96% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/plot_present_best-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 32059 bytes Input file size = 32173 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27008 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27008 Output IDAT size = 27008 bytes (5051 bytes decrease) Output file size = 27086 bytes (5087 bytes = 15.81% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/unnamed-chunk-16-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 25853 bytes Input file size = 25967 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19519 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19519 Output IDAT size = 19519 bytes (6334 bytes decrease) Output file size = 19597 bytes (6370 bytes = 24.53% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/plot_future-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 20506 bytes Input file size = 20608 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17790 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17790 Output IDAT size = 17790 bytes (2716 bytes decrease) Output file size = 17868 bytes (2740 bytes = 13.30% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/unnamed-chunk-24-1.png 288x288 pixels, 8 bits/pixel, 255 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 5039 bytes Input file size = 5894 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4490 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4490 Output IDAT size = 4490 bytes (549 bytes decrease) Output file size = 4568 bytes (1326 bytes = 22.50% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/unnamed-chunk-27-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 20534 bytes Input file size = 20636 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18009 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18009 Output IDAT size = 18009 bytes (2525 bytes decrease) Output file size = 18087 bytes (2549 bytes = 12.35% decrease) --- finished re-building ‘a0_tidysdm_overview.Rmd’ --- re-building ‘a1_palaeodata_application.Rmd’ using rmarkdown Quitting from lines 71-76 [cast_to_sf] (a1_palaeodata_application.Rmd) Error: processing vignette 'a1_palaeodata_application.Rmd' failed with diagnostics: Discrete values supplied to continuous scale. ℹ Example values: NA, NA, NA, NA, and NA --- failed re-building ‘a1_palaeodata_application.Rmd’ --- re-building ‘a2_tidymodels_additions.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/vip-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 18462 bytes Input file size = 18564 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15646 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15646 Output IDAT size = 15646 bytes (2816 bytes decrease) Output file size = 15724 bytes (2840 bytes = 15.30% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/pdp-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 20584 bytes Input file size = 20686 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16279 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16279 Output IDAT size = 16279 bytes (4305 bytes decrease) Output file size = 16357 bytes (4329 bytes = 20.93% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/profile-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 34598 bytes Input file size = 34724 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28003 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28003 Output IDAT size = 28003 bytes (6595 bytes decrease) Output file size = 28081 bytes (6643 bytes = 19.13% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/initial_split-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 66937 bytes Input file size = 67111 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 55145 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 55145 Output IDAT size = 55145 bytes (11792 bytes decrease) Output file size = 55223 bytes (11888 bytes = 17.71% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/training_cv-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 61229 bytes Input file size = 61391 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 52784 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 52784 Output IDAT size = 52784 bytes (8445 bytes decrease) Output file size = 52862 bytes (8529 bytes = 13.89% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/unnamed-chunk-9-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 18566 bytes Input file size = 18668 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14190 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14190 Output IDAT size = 14190 bytes (4376 bytes decrease) Output file size = 14268 bytes (4400 bytes = 23.57% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/build_stack-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13856 bytes Input file size = 13946 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11836 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11836 Output IDAT size = 11836 bytes (2020 bytes decrease) Output file size = 11914 bytes (2032 bytes = 14.57% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/plot_present-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 29019 bytes Input file size = 29133 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24469 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24469 Output IDAT size = 24469 bytes (4550 bytes decrease) Output file size = 24547 bytes (4586 bytes = 15.74% decrease) --- finished re-building ‘a2_tidymodels_additions.Rmd’ --- re-building ‘a3_troubleshooting.Rmd’ using rmarkdown --- finished re-building ‘a3_troubleshooting.Rmd’ SUMMARY: processing the following file failed: ‘a1_palaeodata_application.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.9.4
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘a0_tidysdm_overview.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/unnamed-chunk-3-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 24420 bytes Input file size = 24522 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18497 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18497 Output IDAT size = 18497 bytes (5923 bytes decrease) Output file size = 18575 bytes (5947 bytes = 24.25% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/plot_thin_by_cell-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 26290 bytes Input file size = 26404 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19760 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19760 Output IDAT size = 19760 bytes (6530 bytes decrease) Output file size = 19838 bytes (6566 bytes = 24.87% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/plot_thin_by_dist-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 23579 bytes Input file size = 23681 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17846 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17846 Output IDAT size = 17846 bytes (5733 bytes decrease) Output file size = 17924 bytes (5757 bytes = 24.31% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/plot_sample_pseudoabs-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 52787 bytes Input file size = 52937 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 38441 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 38441 Output IDAT size = 38441 bytes (14346 bytes decrease) Output file size = 38519 bytes (14418 bytes = 27.24% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/unnamed-chunk-7-1.png 672x1056 pixels, 3x8 bits/pixel, RGB Input IDAT size = 116119 bytes Input file size = 116365 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102058 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102058 Output IDAT size = 102058 bytes (14061 bytes decrease) Output file size = 102136 bytes (14229 bytes = 12.23% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/unnamed-chunk-10-1.png 672x768 pixels, 3x8 bits/pixel, RGB Input IDAT size = 138515 bytes Input file size = 138785 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 101422 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 101422 Output IDAT size = 101422 bytes (37093 bytes decrease) Output file size = 101500 bytes (37285 bytes = 26.87% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/training_cv-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 72790 bytes Input file size = 72964 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 63020 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 63020 Output IDAT size = 63020 bytes (9770 bytes decrease) Output file size = 63098 bytes (9866 bytes = 13.52% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/autoplot_models-1.png 672x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 32170 bytes Input file size = 32284 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25299 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25299 Output IDAT size = 25299 bytes (6871 bytes decrease) Output file size = 25377 bytes (6907 bytes = 21.39% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/autoplot_ens-1.png 672x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28366 bytes Input file size = 28480 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22741 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22741 Output IDAT size = 22741 bytes (5625 bytes decrease) Output file size = 22819 bytes (5661 bytes = 19.88% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/plot_present-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 31387 bytes Input file size = 31501 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26396 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26396 Output IDAT size = 26396 bytes (4991 bytes decrease) Output file size = 26474 bytes (5027 bytes = 15.96% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/plot_present_best-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 32059 bytes Input file size = 32173 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27008 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27008 Output IDAT size = 27008 bytes (5051 bytes decrease) Output file size = 27086 bytes (5087 bytes = 15.81% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/unnamed-chunk-16-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 25853 bytes Input file size = 25967 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19519 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19519 Output IDAT size = 19519 bytes (6334 bytes decrease) Output file size = 19597 bytes (6370 bytes = 24.53% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/plot_future-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 20506 bytes Input file size = 20608 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17790 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17790 Output IDAT size = 17790 bytes (2716 bytes decrease) Output file size = 17868 bytes (2740 bytes = 13.30% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/unnamed-chunk-24-1.png 288x288 pixels, 8 bits/pixel, 255 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 5039 bytes Input file size = 5894 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4490 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4490 Output IDAT size = 4490 bytes (549 bytes decrease) Output file size = 4568 bytes (1326 bytes = 22.50% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/unnamed-chunk-27-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 20534 bytes Input file size = 20636 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18009 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18009 Output IDAT size = 18009 bytes (2525 bytes decrease) Output file size = 18087 bytes (2549 bytes = 12.35% decrease) --- finished re-building ‘a0_tidysdm_overview.Rmd’ --- re-building ‘a1_palaeodata_application.Rmd’ using rmarkdown Quitting from lines 71-76 [cast_to_sf] (a1_palaeodata_application.Rmd) Error: processing vignette 'a1_palaeodata_application.Rmd' failed with diagnostics: Discrete values supplied to continuous scale. ℹ Example values: NA, NA, NA, NA, and NA --- failed re-building ‘a1_palaeodata_application.Rmd’ --- re-building ‘a2_tidymodels_additions.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/vip-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 18878 bytes Input file size = 18980 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16033 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16033 Output IDAT size = 16033 bytes (2845 bytes decrease) Output file size = 16111 bytes (2869 bytes = 15.12% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/pdp-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 20584 bytes Input file size = 20686 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16279 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16279 Output IDAT size = 16279 bytes (4305 bytes decrease) Output file size = 16357 bytes (4329 bytes = 20.93% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/profile-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 34598 bytes Input file size = 34724 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28003 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28003 Output IDAT size = 28003 bytes (6595 bytes decrease) Output file size = 28081 bytes (6643 bytes = 19.13% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/initial_split-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 66937 bytes Input file size = 67111 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 55145 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 55145 Output IDAT size = 55145 bytes (11792 bytes decrease) Output file size = 55223 bytes (11888 bytes = 17.71% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/training_cv-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 61229 bytes Input file size = 61391 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 52784 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 52784 Output IDAT size = 52784 bytes (8445 bytes decrease) Output file size = 52862 bytes (8529 bytes = 13.89% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/unnamed-chunk-9-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 18566 bytes Input file size = 18668 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14190 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14190 Output IDAT size = 14190 bytes (4376 bytes decrease) Output file size = 14268 bytes (4400 bytes = 23.57% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/build_stack-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13856 bytes Input file size = 13946 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11836 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11836 Output IDAT size = 11836 bytes (2020 bytes decrease) Output file size = 11914 bytes (2032 bytes = 14.57% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/plot_present-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 29019 bytes Input file size = 29133 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24469 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24469 Output IDAT size = 24469 bytes (4550 bytes decrease) Output file size = 24547 bytes (4586 bytes = 15.74% decrease) --- finished re-building ‘a2_tidymodels_additions.Rmd’ --- re-building ‘a3_troubleshooting.Rmd’ using rmarkdown --- finished re-building ‘a3_troubleshooting.Rmd’ SUMMARY: processing the following file failed: ‘a1_palaeodata_application.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.9.4
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘a0_tidysdm_overview.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-clang/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/unnamed-chunk-3-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 24828 bytes Input file size = 24942 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18844 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18844 Output IDAT size = 18844 bytes (5984 bytes decrease) Output file size = 18922 bytes (6020 bytes = 24.14% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/plot_thin_by_cell-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 26478 bytes Input file size = 26592 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19788 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19788 Output IDAT size = 19788 bytes (6690 bytes decrease) Output file size = 19866 bytes (6726 bytes = 25.29% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/plot_thin_by_dist-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 23877 bytes Input file size = 23979 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17954 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17954 Output IDAT size = 17954 bytes (5923 bytes decrease) Output file size = 18032 bytes (5947 bytes = 24.80% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/plot_sample_pseudoabs-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 52301 bytes Input file size = 52451 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 38318 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 38318 Output IDAT size = 38318 bytes (13983 bytes decrease) Output file size = 38396 bytes (14055 bytes = 26.80% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/unnamed-chunk-7-1.png 672x1056 pixels, 3x8 bits/pixel, RGB Input IDAT size = 116078 bytes Input file size = 116324 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102055 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102055 Output IDAT size = 102055 bytes (14023 bytes decrease) Output file size = 102133 bytes (14191 bytes = 12.20% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/unnamed-chunk-10-1.png 672x768 pixels, 3x8 bits/pixel, RGB Input IDAT size = 138515 bytes Input file size = 138785 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 101422 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 101422 Output IDAT size = 101422 bytes (37093 bytes decrease) Output file size = 101500 bytes (37285 bytes = 26.87% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/training_cv-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 72189 bytes Input file size = 72363 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 62003 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 62003 Output IDAT size = 62003 bytes (10186 bytes decrease) Output file size = 62081 bytes (10282 bytes = 14.21% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/autoplot_models-1.png 672x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 31658 bytes Input file size = 31772 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25126 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25126 Output IDAT size = 25126 bytes (6532 bytes decrease) Output file size = 25204 bytes (6568 bytes = 20.67% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/autoplot_ens-1.png 672x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 30057 bytes Input file size = 30171 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23841 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23841 Output IDAT size = 23841 bytes (6216 bytes decrease) Output file size = 23919 bytes (6252 bytes = 20.72% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/plot_present-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 31186 bytes Input file size = 31300 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26419 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26419 Output IDAT size = 26419 bytes (4767 bytes decrease) Output file size = 26497 bytes (4803 bytes = 15.35% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/plot_present_best-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 31833 bytes Input file size = 31947 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26785 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26785 Output IDAT size = 26785 bytes (5048 bytes decrease) Output file size = 26863 bytes (5084 bytes = 15.91% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/unnamed-chunk-16-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 25783 bytes Input file size = 25897 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19551 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19551 Output IDAT size = 19551 bytes (6232 bytes decrease) Output file size = 19629 bytes (6268 bytes = 24.20% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/plot_future-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 20171 bytes Input file size = 20273 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17738 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17738 Output IDAT size = 17738 bytes (2433 bytes decrease) Output file size = 17816 bytes (2457 bytes = 12.12% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/unnamed-chunk-24-1.png 288x288 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 5050 bytes Input file size = 5908 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4445 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4440 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4440 Output IDAT size = 4440 bytes (610 bytes decrease) Output file size = 4518 bytes (1390 bytes = 23.53% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/unnamed-chunk-27-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 20186 bytes Input file size = 20288 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17803 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17803 Output IDAT size = 17803 bytes (2383 bytes decrease) Output file size = 17881 bytes (2407 bytes = 11.86% decrease) --- finished re-building ‘a0_tidysdm_overview.Rmd’ --- re-building ‘a1_palaeodata_application.Rmd’ using rmarkdown Quitting from lines 71-76 [cast_to_sf] (a1_palaeodata_application.Rmd) Error: processing vignette 'a1_palaeodata_application.Rmd' failed with diagnostics: Discrete values supplied to continuous scale. ℹ Example values: NA, NA, NA, NA, and NA --- failed re-building ‘a1_palaeodata_application.Rmd’ --- re-building ‘a2_tidymodels_additions.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-clang/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/vip-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 18673 bytes Input file size = 18775 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15849 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15849 Output IDAT size = 15849 bytes (2824 bytes decrease) Output file size = 15927 bytes (2848 bytes = 15.17% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/pdp-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 20580 bytes Input file size = 20682 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16286 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16286 Output IDAT size = 16286 bytes (4294 bytes decrease) Output file size = 16364 bytes (4318 bytes = 20.88% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/profile-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 34616 bytes Input file size = 34742 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28020 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28020 Output IDAT size = 28020 bytes (6596 bytes decrease) Output file size = 28098 bytes (6644 bytes = 19.12% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/initial_split-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 66695 bytes Input file size = 66869 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 55085 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 55085 Output IDAT size = 55085 bytes (11610 bytes decrease) Output file size = 55163 bytes (11706 bytes = 17.51% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/training_cv-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 60837 bytes Input file size = 60999 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 51935 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 51935 Output IDAT size = 51935 bytes (8902 bytes decrease) Output file size = 52013 bytes (8986 bytes = 14.73% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/unnamed-chunk-9-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 18541 bytes Input file size = 18643 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14183 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14183 Output IDAT size = 14183 bytes (4358 bytes decrease) Output file size = 14261 bytes (4382 bytes = 23.50% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/build_stack-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13917 bytes Input file size = 14007 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11875 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11875 Output IDAT size = 11875 bytes (2042 bytes decrease) Output file size = 11953 bytes (2054 bytes = 14.66% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/plot_present-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28407 bytes Input file size = 28521 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24126 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24126 Output IDAT size = 24126 bytes (4281 bytes decrease) Output file size = 24204 bytes (4317 bytes = 15.14% decrease) --- finished re-building ‘a2_tidymodels_additions.Rmd’ --- re-building ‘a3_troubleshooting.Rmd’ using rmarkdown --- finished re-building ‘a3_troubleshooting.Rmd’ SUMMARY: processing the following file failed: ‘a1_palaeodata_application.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.9.4
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘a0_tidysdm_overview.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-devel/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/unnamed-chunk-3-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 24828 bytes Input file size = 24942 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18844 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18844 Output IDAT size = 18844 bytes (5984 bytes decrease) Output file size = 18922 bytes (6020 bytes = 24.14% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/plot_thin_by_cell-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 26478 bytes Input file size = 26592 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19788 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19788 Output IDAT size = 19788 bytes (6690 bytes decrease) Output file size = 19866 bytes (6726 bytes = 25.29% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/plot_thin_by_dist-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 23877 bytes Input file size = 23979 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17954 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17954 Output IDAT size = 17954 bytes (5923 bytes decrease) Output file size = 18032 bytes (5947 bytes = 24.80% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/plot_sample_pseudoabs-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 52301 bytes Input file size = 52451 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 38318 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 38318 Output IDAT size = 38318 bytes (13983 bytes decrease) Output file size = 38396 bytes (14055 bytes = 26.80% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/unnamed-chunk-7-1.png 672x1056 pixels, 3x8 bits/pixel, RGB Input IDAT size = 116078 bytes Input file size = 116324 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102055 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 102055 Output IDAT size = 102055 bytes (14023 bytes decrease) Output file size = 102133 bytes (14191 bytes = 12.20% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/unnamed-chunk-10-1.png 672x768 pixels, 3x8 bits/pixel, RGB Input IDAT size = 138515 bytes Input file size = 138785 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 101422 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 101422 Output IDAT size = 101422 bytes (37093 bytes decrease) Output file size = 101500 bytes (37285 bytes = 26.87% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/training_cv-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 72189 bytes Input file size = 72363 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 62003 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 62003 Output IDAT size = 62003 bytes (10186 bytes decrease) Output file size = 62081 bytes (10282 bytes = 14.21% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/autoplot_models-1.png 672x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 32170 bytes Input file size = 32284 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25299 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25299 Output IDAT size = 25299 bytes (6871 bytes decrease) Output file size = 25377 bytes (6907 bytes = 21.39% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/autoplot_ens-1.png 672x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28366 bytes Input file size = 28480 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22741 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22741 Output IDAT size = 22741 bytes (5625 bytes decrease) Output file size = 22819 bytes (5661 bytes = 19.88% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/plot_present-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 31108 bytes Input file size = 31222 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26242 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26242 Output IDAT size = 26242 bytes (4866 bytes decrease) Output file size = 26320 bytes (4902 bytes = 15.70% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/plot_present_best-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 31833 bytes Input file size = 31947 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26785 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26785 Output IDAT size = 26785 bytes (5048 bytes decrease) Output file size = 26863 bytes (5084 bytes = 15.91% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/unnamed-chunk-16-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 25820 bytes Input file size = 25934 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19549 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19549 Output IDAT size = 19549 bytes (6271 bytes decrease) Output file size = 19627 bytes (6307 bytes = 24.32% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/plot_future-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 20189 bytes Input file size = 20291 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17601 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17601 Output IDAT size = 17601 bytes (2588 bytes decrease) Output file size = 17679 bytes (2612 bytes = 12.87% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/unnamed-chunk-24-1.png 288x288 pixels, 8 bits/pixel, 255 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 5039 bytes Input file size = 5894 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4490 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4490 Output IDAT size = 4490 bytes (549 bytes decrease) Output file size = 4568 bytes (1326 bytes = 22.50% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a0_tidysdm_overview_files/figure-html/unnamed-chunk-27-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 20186 bytes Input file size = 20288 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17803 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17803 Output IDAT size = 17803 bytes (2383 bytes decrease) Output file size = 17881 bytes (2407 bytes = 11.86% decrease) --- finished re-building ‘a0_tidysdm_overview.Rmd’ --- re-building ‘a1_palaeodata_application.Rmd’ using rmarkdown Quitting from lines 71-76 [cast_to_sf] (a1_palaeodata_application.Rmd) Error: processing vignette 'a1_palaeodata_application.Rmd' failed with diagnostics: Discrete values supplied to continuous scale. ℹ Example values: NA, NA, NA, NA, and NA --- failed re-building ‘a1_palaeodata_application.Rmd’ --- re-building ‘a2_tidymodels_additions.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-devel/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/vip-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 18679 bytes Input file size = 18781 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15815 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15815 Output IDAT size = 15815 bytes (2864 bytes decrease) Output file size = 15893 bytes (2888 bytes = 15.38% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/pdp-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 20580 bytes Input file size = 20682 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16286 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16286 Output IDAT size = 16286 bytes (4294 bytes decrease) Output file size = 16364 bytes (4318 bytes = 20.88% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/profile-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 34616 bytes Input file size = 34742 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28020 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28020 Output IDAT size = 28020 bytes (6596 bytes decrease) Output file size = 28098 bytes (6644 bytes = 19.12% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/initial_split-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 66695 bytes Input file size = 66869 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 55085 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 55085 Output IDAT size = 55085 bytes (11610 bytes decrease) Output file size = 55163 bytes (11706 bytes = 17.51% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/training_cv-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 60837 bytes Input file size = 60999 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 51935 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 51935 Output IDAT size = 51935 bytes (8902 bytes decrease) Output file size = 52013 bytes (8986 bytes = 14.73% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/unnamed-chunk-9-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 18566 bytes Input file size = 18668 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14190 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14190 Output IDAT size = 14190 bytes (4376 bytes decrease) Output file size = 14268 bytes (4400 bytes = 23.57% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/build_stack-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13856 bytes Input file size = 13946 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11836 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11836 Output IDAT size = 11836 bytes (2020 bytes decrease) Output file size = 11914 bytes (2032 bytes = 14.57% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/tidysdm.Rcheck/vign_test/tidysdm/vignettes/a2_tidymodels_additions_files/figure-html/plot_present-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28356 bytes Input file size = 28470 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24035 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24035 Output IDAT size = 24035 bytes (4321 bytes decrease) Output file size = 24113 bytes (4357 bytes = 15.30% decrease) --- finished re-building ‘a2_tidymodels_additions.Rmd’ --- re-building ‘a3_troubleshooting.Rmd’ using rmarkdown --- finished re-building ‘a3_troubleshooting.Rmd’ SUMMARY: processing the following file failed: ‘a1_palaeodata_application.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc