CRAN Package Check Results for Package themetagenomics

Last updated on 2019-04-20 14:47:05 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1.0 30.54 217.92 248.46 ERROR
r-devel-linux-x86_64-debian-gcc 0.1.0 28.17 267.09 295.26 OK
r-devel-linux-x86_64-fedora-clang 0.1.0 486.98 OK
r-devel-linux-x86_64-fedora-gcc 0.1.0 438.64 OK
r-devel-windows-ix86+x86_64 0.1.0 96.00 744.00 840.00 OK
r-patched-linux-x86_64 0.1.0 29.42 298.34 327.76 OK
r-patched-solaris-x86 0.1.0 624.30 OK
r-release-linux-x86_64 0.1.0 25.83 291.83 317.66 OK
r-release-windows-ix86+x86_64 0.1.0 56.00 686.00 742.00 OK
r-release-osx-x86_64 0.1.0 OK
r-oldrel-windows-ix86+x86_64 0.1.0 75.00 815.00 890.00 OK
r-oldrel-osx-x86_64 0.1.0 OK

Check Details

Version: 0.1.0
Check: tests
Result: ERROR
     Running 'testthat.R' [20s/23s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(themetagenomics)
     Loading required package: Rcpp
     >
     > test_check("themetagenomics")
     -- 1. Error: t4f works for different params (@test-predict.R#48) --------------
     BLAS/LAPACK routine 'DTRTI2' gave error code -1
     1: find_topics(x, K = 5) at testthat/test-predict.R:48
     2: find_topics.themetadata(x, K = 5)
     3: stm_wrapper(K = as.integer(K), docs = docs, vocab = vocab, formula, metadata = metadata,
     sigma_prior = sigma_prior, model = model, iters = iters, tol = tol, batches = batches,
     seed = mod_seed, verbose = verbose, verbose_n = verbose_n, init_type = init_type,
     control = control)
     4: stm::stm(K = K, documents = docs, vocab = vocab, data = metadata, prevalence = formula,
     init.type = init_type, sigma.prior = sigma_prior, model = model, max.em.its = iters,
     emtol = tol, ngroups = batches, seed = seed, verbose = verbose, reportevery = verbose_n,
     control = control)
     5: stm.control(documents, vocab, settings, model)
     6: estep(documents = documents, beta.index = betaindex, update.mu = (!is.null(mu$gamma)),
     beta$beta, lambda, mu$mu, sigma, verbose)
     7: logisticnormalcpp(eta = init, mu = mu.i, siginv = siginv, beta = beta.i, doc = doc,
     sigmaentropy = sigmaentropy)
     8: hpbcpp(optim.out$par, doc_ct = doc.ct, mu = mu, siginv = siginv, beta = beta, sigmaentropy = sigmaentropy)
    
     == testthat results ===========================================================
     OK: 45 SKIPPED: 4 FAILED: 1
     1. Error: t4f works for different params (@test-predict.R#48)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.1.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building 'functional_prediction.Rmd' using rmarkdown
    --- finished re-building 'functional_prediction.Rmd'
    
    --- re-building 'thematic_structure.Rmd' using rmarkdown
    Quitting from lines 91-92 (thematic_structure.Rmd)
    Error: processing vignette 'thematic_structure.Rmd' failed with diagnostics:
    BLAS/LAPACK routine 'DTRTI2' gave error code -1
    --- failed re-building 'thematic_structure.Rmd'
    
    SUMMARY: processing the following file failed:
     'thematic_structure.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-devel-linux-x86_64-debian-clang