Last updated on 2023-03-21 21:57:15 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.16 | 4.77 | 62.43 | 67.20 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.16 | 3.21 | 46.13 | 49.34 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.16 | 81.29 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.16 | 85.42 | OK | |||
| r-patched-linux-x86_64 | 1.0.16 | 3.65 | 59.49 | 63.14 | OK | |
| r-release-linux-x86_64 | 1.0.16 | 4.68 | 57.61 | 62.29 | OK | |
| r-release-macos-arm64 | 1.0.16 | 48.00 | OK | |||
| r-release-macos-x86_64 | 1.0.16 | 61.00 | OK | |||
| r-release-windows-x86_64 | 1.0.16 | 25.00 | 96.00 | 121.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.16 | 49.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.0.16 | 61.00 | OK | |||
| r-oldrel-windows-ix86+x86_64 | 1.0.16 | 11.00 | 77.00 | 88.00 | ERROR |
Version: 1.0.16
Check: R code for possible problems
Result: NOTE
Initiating curl with CURL_SSL_BACKEND: openssl
Flavor: r-oldrel-windows-ix86+x86_64
Version: 1.0.16
Check: tests
Result: ERROR
Running 'testthat.R' [10s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(pmparser)
Initiating curl with CURL_SSL_BACKEND: openssl
>
> test_check('pmparser')
[ FAIL 4 | WARN 4 | SKIP 4 | PASS 67 ]
== Skipped tests ===============================================================
* On CRAN (4)
== Failed tests ================================================================
-- Error ('test_modify_pubmed_db_dup.R:51:3'): modifyPubmedDb create is unique --
<SSL_CONNECT_ERROR/GenericCurlError/error/condition>
Error in `function (type, msg, asError = TRUE)
{
if (!is.character(type)) {
i = match(type, CURLcodeValues)
typeName = if (is.na(i))
character()
else names(CURLcodeValues)[i]
}
typeName = gsub("^CURLE_", "", typeName)
fun = (if (asError)
stop
else warning)
fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
"GenericCurlError", "error", "condition")))
}(35L, "error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version",
TRUE)`: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
Backtrace:
x
1. +-pmparser::modifyPubmedDb(...) at test_modify_pubmed_db_dup.R:51:2
2. | \-pmparser:::getReadme(con = con)
3. | \-RCurl::getURL(glue("{remoteDir}/{filename}"))
4. | \-RCurl::curlPerform(curl = curl, .opts = opts, .encoding = .encoding)
5. \-RCurl (local) `<fn>`(...)
-- Error ('test_modify_pubmed_db_dup.R:67:3'): modifyPubmedDb update is unique --
Error in `gzfile(file, open = "rb")`: cannot open the connection
Backtrace:
x
1. \-pmparser::modifyPubmedDb(...) at test_modify_pubmed_db_dup.R:67:2
2. \-pmparser::getCitation(...)
3. \-pmparser:::writeTableInChunks(...)
4. +-R.utils::countLines(path)
5. \-R.utils::countLines.default(path)
6. \-base::gzfile(file, open = "rb")
-- Error ('test_modify_pubmed_db_std.R:22:3'): modifyPubmedDb create matches standard --
<SSL_CONNECT_ERROR/GenericCurlError/error/condition>
Error in `function (type, msg, asError = TRUE)
{
if (!is.character(type)) {
i = match(type, CURLcodeValues)
typeName = if (is.na(i))
character()
else names(CURLcodeValues)[i]
}
typeName = gsub("^CURLE_", "", typeName)
fun = (if (asError)
stop
else warning)
fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
"GenericCurlError", "error", "condition")))
}(35L, "error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version",
TRUE)`: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
Backtrace:
x
1. +-pmparser::modifyPubmedDb(...) at test_modify_pubmed_db_std.R:22:2
2. | \-pmparser:::getReadme(con = con)
3. | \-RCurl::getURL(glue("{remoteDir}/{filename}"))
4. | \-RCurl::curlPerform(curl = curl, .opts = opts, .encoding = .encoding)
5. \-RCurl (local) `<fn>`(...)
-- Error ('test_modify_pubmed_db_std.R:42:3'): modifyPubmedDb update matches standard --
Error in `gzfile(file, open = "rb")`: cannot open the connection
Backtrace:
x
1. \-pmparser::modifyPubmedDb(...) at test_modify_pubmed_db_std.R:42:2
2. \-pmparser::getCitation(...)
3. \-pmparser:::writeTableInChunks(...)
4. +-R.utils::countLines(path)
5. \-R.utils::countLines.default(path)
6. \-base::gzfile(file, open = "rb")
[ FAIL 4 | WARN 4 | SKIP 4 | PASS 67 ]
Error: Test failures
In addition: Warning message:
call dbDisconnect() when finished working with a connection
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64