Last updated on 2023-10-01 03:55:07 CEST.
| Package | FAIL | ERROR | NOTE | OK |
|---|---|---|---|---|
| ACNE | 5 | 8 | ||
| aroma.affymetrix | 1 | 10 | 2 | |
| aroma.apd | 2 | 11 | ||
| aroma.cn | 1 | 6 | 6 | |
| aroma.core | 1 | 12 | ||
| calmate | 1 | 12 | ||
| dChipIO | 13 | |||
| doFuture | 13 | |||
| future | 5 | 8 | ||
| future.apply | 13 | |||
| future.batchtools | 5 | 8 | ||
| future.callr | 13 | |||
| future.tests | 13 | |||
| globals | 13 | |||
| listenv | 5 | 8 | ||
| matrixStats | 5 | 8 | ||
| parallelly | 5 | 8 | ||
| port4me | 13 | |||
| profmem | 13 | |||
| progressr | 13 | |||
| PSCBS | 1 | 5 | 7 | |
| R.cache | 13 | |||
| R.devices | 10 | 3 | ||
| R.filesets | 5 | 8 | ||
| R.huge | 5 | 8 | ||
| R.matlab | 1 | 12 | ||
| R.methodsS3 | 13 | |||
| R.oo | 5 | 8 | ||
| R.rsp | 5 | 8 | ||
| R.utils | 5 | 8 | ||
| startup | 13 | |||
| TopDom | 13 |
Current CRAN status: NOTE: 5, OK: 8
Version: 0.9.0
Check: Rd \usage sections
Result: NOTE
Documented arguments not in \usage in documentation object 'fitSnpNmfArray':
‘maxIter’ ‘acc’
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Current CRAN status: ERROR: 1, NOTE: 10, OK: 2
Version: 3.2.1
Check: Rd \usage sections
Result: NOTE
Documented arguments not in \usage in documentation object 'AromaUnitTabularBinaryFile$allocateFromCdf':
‘path’ ‘tags’ ‘footer’
Documented arguments not in \usage in documentation object 'byChipType.DChipSnpInformation':
‘rootPath’ ‘pattern’ ‘verbose’
Documented arguments not in \usage in documentation object 'UgpGenomeInformation$byChipType':
‘version’
Documented arguments not in \usage in documentation object 'calculateResidualSet.FirmaModel':
‘verbose’
Documented arguments not in \usage in documentation object 'findByChipType.AromaChipTypeAnnotationFile':
‘chipType’ ‘tags’
Documented arguments not in \usage in documentation object 'fit.SmoothMultiarrayModel':
‘data’
Documented arguments not in \usage in documentation object 'getCellIndices.ExonChipEffectFile':
‘units’
Documented arguments not in \usage in documentation object 'getImage.AffymetrixCelFile':
‘palette’
Documented arguments not in \usage in documentation object 'getOutputDataSet.Transform':
‘force’
Documented arguments not in \usage in documentation object 'getUnitTypes.AffymetrixCdfFile':
‘map’
Documented arguments not in \usage in documentation object 'plotMvsX.AffymetrixCelFile':
‘xlim’ ‘xlab’
Documented arguments not in \usage in documentation object 'process.BackgroundCorrection':
‘force’ ‘verbose’
Documented arguments not in \usage in documentation object 'readUnits.CnagCfhFile':
‘cdf’
Documented arguments not in \usage in documentation object 'setArrays.ArrayExplorer':
‘arrays’
Documented arguments not in \usage in documentation object 'setRestructor.AffymetrixCdfFile':
‘units’
Documented arguments not in \usage in documentation object 'setupExampleData':
‘dirs’
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Version: 3.2.1
Check: installed package size
Result: NOTE
installed size is 5.9Mb
sub-directories of 1Mb or more:
R 2.3Mb
help 1.2Mb
testScripts 1.3Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 3.2.1
Check: package dependencies
Result: ERROR
Package required but not available: ‘aroma.core’
Packages suggested but not available for checking:
'affxparser', 'aroma.light', 'oligo', 'oligoClasses',
'pdInfoBuilder', 'AffymetrixDataTestFiles'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-release-macos-arm64
Version: 3.2.1
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'affxparser', 'oligo', 'oligoClasses', 'pdInfoBuilder',
'AffymetrixDataTestFiles'
Flavors: r-release-macos-x86_64, r-oldrel-macos-arm64
Version: 3.2.1
Check: Rd cross-references
Result: NOTE
Packages unavailable to check Rd xrefs: ‘affxparser’, ‘oligo’, ‘oligoClasses’
Flavors: r-release-macos-x86_64, r-oldrel-macos-arm64
Current CRAN status: NOTE: 2, OK: 11
Version: 0.7.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘affxparser’
Flavors: r-release-macos-arm64, r-release-macos-x86_64
Version: 0.7.0
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘affxparser’
Flavors: r-release-macos-arm64, r-release-macos-x86_64
Current CRAN status: ERROR: 1, NOTE: 6, OK: 6
Version: 1.7.0
Check: Rd \usage sections
Result: NOTE
Documented arguments not in \usage in documentation object 'fitOne.MultiSourceCopyNumberNormalization':
‘name’
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Version: 1.7.0
Check: package dependencies
Result: ERROR
Packages required but not available: 'aroma.core', 'PSCBS'
Packages suggested but not available for checking: 'aroma.light', 'GLAD'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-release-macos-arm64
Version: 1.7.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘GLAD’
Flavor: r-release-macos-x86_64
Current CRAN status: ERROR: 1, NOTE: 12
Version: 3.3.0
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'sfit', 'expectile', 'HaarSeg', 'mpcbs'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 3.3.0
Check: Rd \usage sections
Result: NOTE
Documented arguments not in \usage in documentation object 'fit.CopyNumberSegmentationModel':
‘chromosome’
Documented arguments not in \usage in documentation object 'getPath.Explorer':
‘create’
Documented arguments not in \usage in documentation object 'process.AromaTransform':
‘force’ ‘verbose’
Documented arguments not in \usage in documentation object 'process.ChromosomeExplorer':
‘chromosome’
Documented arguments not in \usage in documentation object 'process.Explorer':
‘arrays’ ‘verbose’
Documented arguments not in \usage in documentation object 'setArrays.Explorer':
‘arrays’
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Version: 3.3.0
Check: package dependencies
Result: ERROR
Package required but not available: ‘PSCBS’
Packages suggested but not available for checking:
'aroma.light', 'GLAD', 'sfit', 'expectile', 'HaarSeg', 'mpcbs'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-release-macos-arm64
Version: 3.3.0
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'GLAD', 'sfit', 'expectile', 'HaarSeg', 'mpcbs'
Flavor: r-release-macos-x86_64
Version: 3.3.0
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘GLAD’
Flavor: r-release-macos-x86_64
Current CRAN status: ERROR: 1, OK: 12
Version: 0.13.0
Check: package dependencies
Result: ERROR
Package required but not available: ‘aroma.core’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-release-macos-arm64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 5, OK: 8
Version: 1.33.0
Check: Rd \usage sections
Result: NOTE
Documented arguments not in \usage in documentation object 'mandelbrot':
‘Z’ ‘xmid’ ‘ymid’ ‘side’ ‘resolution’ ‘maxIter’ ‘tau’
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: NOTE: 5, OK: 8
Version: 0.12.0
Check: Rd \usage sections
Result: NOTE
Documented arguments not in \usage in documentation object 'loggedOutput':
‘future’
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 5, OK: 8
Version: 0.9.0
Check: Rd \usage sections
Result: NOTE
Documented arguments not in \usage in documentation object 'get_variable':
‘x’ ‘name’ ‘mustExist’ ‘create’
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Current CRAN status: NOTE: 5, OK: 8
Version: 1.0.0
Check: Rd \usage sections
Result: NOTE
Documented arguments not in \usage in documentation object 'x_OP_y':
‘idxs’
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Current CRAN status: NOTE: 5, OK: 8
Version: 1.36.0
Check: Rd \usage sections
Result: NOTE
Documented arguments not in \usage in documentation object 'getOption2':
‘envvar’
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: ERROR: 1, NOTE: 5, OK: 7
Version: 0.66.0
Check: Rd \usage sections
Result: NOTE
Documented arguments not in \usage in documentation object 'estimateDeltaLOH.PairedPSCBS':
‘scale’
Documented arguments not in \usage in documentation object 'getLocusData.AbstractCBS':
‘splitters’
Documented arguments not in \usage in documentation object 'getSegments.AbstractCBS':
‘simplify’ ‘splitters’
Documented arguments not in \usage in documentation object 'mergeTwoSegments.AbstractCBS':
‘left’ ‘update’ ‘verbose’
Documented arguments not in \usage in documentation object 'plotTracks.PairedPSCBS':
‘x’ ‘tracks’ ‘scatter’ ‘calls’ ‘pch’ ‘col’ ‘cex’ ‘changepoints’
‘grid’ ‘quantiles’ ‘xlim’ ‘Clim’ ‘Blim’ ‘xScale’ ‘add’ ‘subplots’
‘verbose’
Documented arguments not in \usage in documentation object 'updateMeansTogether.AbstractCBS':
‘idxList’ ‘verbose’
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Version: 0.66.0
Check: package dependencies
Result: ERROR
Package required but not available: ‘aroma.light’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-release-macos-arm64
Current CRAN status: OK: 13
Current CRAN status: NOTE: 10, OK: 3
Version: 2.17.1
Check: dependencies in R code
Result: NOTE
There are ::: calls to the package's namespace in its code. A package
almost never needs to use ::: for its own objects:
‘devAll’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Version: 2.17.1
Check: Rd \usage sections
Result: NOTE
Documented arguments not in \usage in documentation object 'favicon':
‘file’
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Current CRAN status: NOTE: 5, OK: 8
Version: 2.15.0
Check: Rd \usage sections
Result: NOTE
Documented arguments not in \usage in documentation object 'compareChecksum.GenericDataFile':
‘verbose’
Documented arguments not in \usage in documentation object 'dim.GenericTabularFile':
‘...’
Documented arguments not in \usage in documentation object 'dsApplyInPairs.GenericDataFileSet':
‘ds’
Documented arguments not in \usage in documentation object 'GenericDataFile$fromFile':
‘unknown’
Documented arguments not in \usage in documentation object 'gzip.GenericDataFile':
‘verbose’
Documented arguments not in \usage in documentation object 'readChecksum.ChecksumFile':
‘verbose’
Documented arguments not in \usage in documentation object 'writeChecksum.GenericDataFile':
‘verbose’
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Current CRAN status: NOTE: 5, OK: 8
Version: 0.10.0
Check: Rd \usage sections
Result: NOTE
Documented arguments not in \usage in documentation object 'dimnames.AbstractFileArray':
‘...’
Documented arguments not in \usage in documentation object 'length.AbstractFileArray':
‘...’
Documented arguments not in \usage in documentation object 'readContiguousValues.AbstractFileArray':
‘length’
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Current CRAN status: FAIL: 1, OK: 12
Version: 3.7.0
Check: tests
Result: FAIL
Check process probably crashed or hung up for 20 minutes ... killed
Most likely this happened in the example checks (?),
if not, ignore the following last lines of example output:
+ })
ERROR: Detected objects with duplicated names (A). Only the last occurance of each duplicated object will be available in MATLAB if completed: writeMat.default(filename, A = A, B = B, A = C)
>
>
> ## Not run:
> ##D # When writing to a stream connection the receiver needs to know on
> ##D # beforehand how many bytes are available. This can be done by using
> ##D # the 'onWrite' argument.
> ##D onWrite <- function(x)
> ##D writeBin(x$length, con = x$con, size = 4, endian = "little")
> ##D writeMat(con, A = A, B = B, onWrite = onWrite)
> ## End(Not run)
>
>
>
> ### * <FOOTER>
> ###
> cleanEx()
> options(digits = 7L)
> base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
Time elapsed: 55.03 167.63 225.58 NA NA
> grDevices::dev.off()
null device
1
> ###
> ### Local variables: ***
> ### mode: outline-minor ***
> ### outline-regexp: "\\(> \\)?### [*]+" ***
> ### End: ***
> quit('no')
======== End of example output (where/before crash/hang up occured ?) ========
Flavor: r-release-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: NOTE: 5, OK: 8
Version: 1.25.0
Check: Rd \usage sections
Result: NOTE
Documented arguments not in \usage in documentation object 'DOLLAR.Class':
‘...’
Documented arguments not in \usage in documentation object 'DOLLAR< -.Class':
‘...’
Documented arguments not in \usage in documentation object 'getMethods.Class':
‘unqiue’
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Current CRAN status: NOTE: 5, OK: 8
Version: 0.45.0
Check: Rd \usage sections
Result: NOTE
Documented arguments not in \usage in documentation object '[.RspDocument':
‘...’
Documented arguments not in \usage in documentation object 'RspEvalDirective':
‘attributes’
Documented arguments not in \usage in documentation object 'RspExpression':
‘object’
Documented arguments not in \usage in documentation object 'RspIncludeDirective':
‘attributes’
Documented arguments not in \usage in documentation object 'buildNonSweaveVignette':
‘pathname’
Documented arguments not in \usage in documentation object 'buildNonSweaveVignettes':
‘path’ ‘pattern’
Documented arguments not in \usage in documentation object 'exprToCode.RspSourceCodeFactory':
‘expr’
Documented arguments not in \usage in documentation object 'getContent.RspText':
‘unescaped’
Documented arguments not in \usage in documentation object 'toSourceCode.RspSourceCodeFactory':
‘expr’
Documented arguments not in \usage in documentation object 'trim.RspDocument':
‘envir’
Documented arguments not in \usage in documentation object 'writeResponse.RspResponse':
‘collapse’ ‘sep’
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Current CRAN status: NOTE: 5, OK: 8
Version: 2.12.2
Check: Rd \usage sections
Result: NOTE
Documented arguments not in \usage in documentation object 'hsize':
‘sizes’ ‘digits’ ‘units’ ‘bytes’
Documented arguments not in \usage in documentation object 'timestamp.Verbose':
‘stamp’
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13