CRAN Package Check Results for Package gprofiler2

Last updated on 2020-01-19 21:48:44 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1.8 8.23 69.13 77.36 OK
r-devel-linux-x86_64-debian-gcc 0.1.8 5.94 54.19 60.13 OK
r-devel-linux-x86_64-fedora-clang 0.1.8 89.65 OK
r-devel-linux-x86_64-fedora-gcc 0.1.8 97.07 OK
r-devel-windows-ix86+x86_64 0.1.8 33.00 144.00 177.00 OK
r-devel-windows-ix86+x86_64-gcc8 0.1.8 21.00 146.00 167.00 OK
r-patched-linux-x86_64 0.1.8 6.66 61.68 68.34 OK
r-patched-solaris-x86 0.1.8 110.00 WARN
r-release-linux-x86_64 0.1.8 6.07 62.32 68.39 OK
r-release-windows-ix86+x86_64 0.1.8 22.00 137.00 159.00 OK
r-release-osx-x86_64 0.1.8 ERROR
r-oldrel-windows-ix86+x86_64 0.1.8 7.00 95.00 102.00 OK
r-oldrel-osx-x86_64 0.1.8 ERROR

Check Details

Version: 0.1.8
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘gprofiler2.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 239-240 (gprofiler2.Rmd)
    Error: processing vignette 'gprofiler2.Rmd' failed with diagnostics:
    there is no package called 'webshot'
    --- failed re-building ‘gprofiler2.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘gprofiler2.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.1.8
Check: examples
Result: ERROR
    Running examples in ‘gprofiler2-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: gconvert
    > ### Title: Gene ID conversion.
    > ### Aliases: gconvert
    >
    > ### ** Examples
    >
    > gconvert(c("POU5F1", "SOX2", "NANOG"), organism = "hsapiens", target="AFFY_HG_U133_PLUS_2")
    Error in function (type, msg, asError = TRUE) :
     Failed to connect to biit.cs.ut.ee port 80: Operation timed out
    Calls: gconvert -> <Anonymous> -> <Anonymous> -> fun
    Execution halted
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 0.1.8
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘gprofiler2.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 109-116 (gprofiler2.Rmd)
    Error: processing vignette 'gprofiler2.Rmd' failed with diagnostics:
    Failed to connect to biit.cs.ut.ee port 80: Operation timed out
    --- failed re-building ‘gprofiler2.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘gprofiler2.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-osx-x86_64

Version: 0.1.8
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 109-116 (gprofiler2.Rmd)
    Error: processing vignette 'gprofiler2.Rmd' failed with diagnostics:
    Failed to connect to biit.cs.ut.ee port 80: Operation timed out
    Execution halted
Flavor: r-oldrel-osx-x86_64