CRAN Package Check Results for Package fst

Last updated on 2019-05-22 21:51:02 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.9.0 112.70 71.35 184.05 OK
r-devel-linux-x86_64-debian-gcc 0.9.0 72.42 52.29 124.71 OK
r-devel-linux-x86_64-fedora-clang 0.9.0 261.36 NOTE
r-devel-linux-x86_64-fedora-gcc 0.9.0 204.65 OK
r-devel-windows-ix86+x86_64 0.9.0 195.00 248.00 443.00 OK
r-patched-linux-x86_64 0.9.0 83.04 66.13 149.17 OK
r-patched-solaris-x86 0.9.0 212.70 ERROR
r-release-linux-x86_64 0.9.0 86.81 66.56 153.37 OK
r-release-windows-ix86+x86_64 0.9.0 265.00 195.00 460.00 OK
r-release-osx-x86_64 0.9.0 NOTE
r-oldrel-windows-ix86+x86_64 0.9.0 180.00 117.00 297.00 OK
r-oldrel-osx-x86_64 0.9.0 NOTE

Additional issues

rchk

Check Details

Version: 0.9.0
Check: installed package size
Result: NOTE
     installed size is 5.5Mb
     sub-directories of 1Mb or more:
     libs 5.4Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 0.9.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [52s/84s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     >
     > library(testthat)
     > library(fst)
     > library(data.table)
     > library(lintr)
     > library(bit64)
     Loading required package: bit
     Attaching package bit
     package:bit (c) 2008-2012 Jens Oehlschlaegel (GPL-2)
     creators: bit bitwhich
     coercion: as.logical as.integer as.bit as.bitwhich which
     operator: ! & | xor != ==
     querying: print length any all min max range sum summary
     bit access: length<- [ [<- [[ [[<-
     for more help type ?bit
    
     Attaching package: 'bit'
    
     The following object is masked from 'package:data.table':
    
     setattr
    
     The following object is masked from 'package:base':
    
     xor
    
     Attaching package bit64
     package:bit64 (c) 2011-2012 Jens Oehlschlaegel
     creators: integer64 seq :
     coercion: as.integer64 as.vector as.logical as.integer as.double as.character as.bin
     logical operator: ! & | xor != == < <= >= >
     arithmetic operator: + - * / %/% %% ^
     math: sign abs sqrt log log2 log10
     math: floor ceiling trunc round
     querying: is.integer64 is.vector [is.atomic} [length] format print str
     values: is.na is.nan is.finite is.infinite
     aggregation: any all min max range sum prod
     cumulation: diff cummin cummax cumsum cumprod
     access: length<- [ [<- [[ [[<-
     combine: c rep cbind rbind as.data.frame
     WARNING don't use as subscripts
     WARNING semantics differ from integer
     for more help type ?bit64
    
     Attaching package: 'bit64'
    
     The following object is masked from 'package:bit':
    
     still.identical
    
     The following objects are masked from 'package:base':
    
     %in%, :, is.double, match, order, rank
    
     >
     > source("testthat/helper_fstwrite.R") # cross-version testing
     >
     > test_check("fst")
     ── 1. Failure: Medium factor with a single NA level (@test_factor.R#130) ──────
     `dt` not equal to `data`.
     Component "A": Mean relative difference: 0.6666124
    
     ── 2. Failure: Medium factor with a single NA level (@test_factor.R#130) ──────
     to_frame(dt[offset:nrow(dt), , drop = FALSE]) not equal to `data`.
     Component "A": Mean relative difference: 0.6666124
    
     ── 3. Failure: Medium factor with a single NA level (@test_factor.R#130) ──────
     to_frame(dt[1:(nrow(dt) - cap), , drop = FALSE]) not equal to `data`.
     Component "A": Mean relative difference: 0.6666124
    
     ── 4. Failure: Medium factor with a single NA level (@test_factor.R#130) ──────
     to_frame(dt[offset:(nrow(dt) - cap), , drop = FALSE]) not equal to `data`.
     Component "A": Mean relative difference: 0.6666124
    
     ── 5. Failure: Single uncompressed vectors (@test_fst.R#105) ──────────────────
     `sub_dt` not equal to `data`.
     Component "Xint": Mean relative difference: 0.6666124
     args: col: Xint | from: 1 | to: 10000 | setColumns: | compress: 0 | tot_length 10000 cols sub_dt: 1 , rows sub_dt: 10000 cols data: 1 , rows data: 10000 head sub_dt: 1,2,3,4,5,6,7,8,9,10 head data: 1,2,3,4,5,6,7,8,9,10 unequals: 4096 uneq rows sub_dt1 4097,4098,4099,4100,4101,4102,4103,4104,4105,4106,4107,4108,4109,4110,4111,4112,4113,4114,4115,4116,4117,4118,4119,4120,4121 uneq rows sub_dt2 4097,4098,4099,4100,4101,4102,4103,4104,4105,4106,4107,4108,4109,4110,4111,4112,4113,4114,4115,4116,4117,4118,4119,4120,4121 uneq rows sub_dt3 8193,8194,8195,8196,8197,8198,8199,8200,8201,8202,8203,8204,8205,8206,8207,8208,8209,8210,8211,8212,8213,8214,8215,8216,8217
    
     ── 6. Failure: Single uncompressed vectors (@test_fst.R#105) ──────────────────
     `sub_dt` not equal to `data`.
     Component "Ylog": 'is.NA' value mismatch: 3223 in current 3289 in target
     args: col: Ylog | from: 1 | to: 10000 | setColumns: | compress: 0 | tot_length 10000 cols sub_dt: 1 , rows sub_dt: 10000 cols data: 1 , rows data: 10000 head sub_dt: FALSE,TRUE,FALSE,NA,FALSE,NA,FALSE,TRUE,TRUE,TRUE head data: FALSE,TRUE,FALSE,NA,FALSE,NA,FALSE,TRUE,TRUE,TRUE unequals: NA uneq rows sub_dt1 NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA uneq rows sub_dt2 NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA uneq rows sub_dt3 NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA
    
     ── 7. Failure: Single uncompressed vectors (@test_fst.R#105) ──────────────────
     `sub_dt` not equal to `data`.
     Component "Zdoub": Mean relative difference: 1.397927
     args: col: Zdoub | from: 1 | to: 10000 | setColumns: | compress: 0 | tot_length 10000 cols sub_dt: 1 , rows sub_dt: 10000 cols data: 1 , rows data: 10000 head sub_dt: -0.154601305713922,-0.649014469697803,-1.77076811390076,-1.61444745305411,0.0323631596344502,0.419125111975899,0.963730412018745,0.700479413307385,1.16039866031266,-0.0595481255267691 head data: -0.154601305713922,-0.649014469697803,-1.77076811390076,-1.61444745305411,0.0323631596344502,0.419125111975899,0.963730412018745,0.700479413307385,1.16039866031266,-0.0595481255267691 unequals: 4096 uneq rows sub_dt1 -0.245577606537864,0.282864295216731,0.976372415847959,-0.429681390767127,-1.63233953087284,-0.0276611609469953,0.195998814114646,0.324381898713114,-0.272731073467608,0.86558379632012,1.17309676163439,1.45015421088284,1.40395353823989,-1.7495752821228,-0.75730746652103,0.568772545165975,0.630961184284179,0.368472532700299,0.294394010359023,-1.65513584540508,2.09025188220191,0.175502035782387,0.553027780741131,1.03300855232133,-1.18134643561472 uneq rows sub_dt2 4097,4098,4099,4100,4101,4102,4103,4104,4105,4106,4107,4108,4109,4110,4111,4112,4113,4114,4115,4116,4117,4118,4119,4120,4121 uneq rows sub_dt3 -1.41178123530624,-0.340840481687762,1.69639643030905,-0.209290977254018,0.951931066806742,0.128579667467981,0.592478543342681,0.380845157876592,-1.31038282243601,0.62356553711568,-0.630314294713526,0.463961150628287,-0.956182853577298,0.0294057217301527,-1.44416558965236,-0.452991240694909,-1.91645891061534,0.627025775834438,-0.202827149539997,-0.0626242025156529,0.72401614507934,1.59716405105998,0.784528568185241,0.38270615307479,0.840098649417546
    
     ── 8. Failure: Single uncompressed vectors (@test_fst.R#105) ──────────────────
     `sub_dt` not equal to `data`.
     Component "WFact": 3604 string mismatches
     args: col: WFact | from: 1 | to: 10000 | setColumns: | compress: 0 | tot_length 10000 cols sub_dt: 1 , rows sub_dt: 10000 cols data: 1 , rows data: 10000 head sub_dt: XEFU,C,C,I,S,ZFIG,KFP,KFP,YOPU,S head data: XEFU,C,C,I,S,ZFIG,KFP,KFP,YOPU,S unequals: 3604 uneq rows sub_dt1 I,ZFIG,XEFU,KFP,I,IJR,S,XEFU,C,ZFIG,IJR,KFP,I,C,KFP,I,C,KFP,YOPU,IJR,S,ZFIG,KFP,IJR,I uneq rows sub_dt2 4097,4098,4099,4100,4101,4102,4103,4105,4106,4108,4109,4110,4112,4114,4116,4117,4118,4119,4120,4121,4122,4123,4124,4125,4127 uneq rows sub_dt3 XEFU,C,C,I,S,ZFIG,KFP,YOPU,S,IJR,YOPU,I,YOPU,I,IJR,S,IJR,ZFIG,XEFU,KFP,IJR,KFP,I,KFP,ZFIG
    
     ── 9. Failure: Single uncompressed vectors (@test_fst.R#105) ──────────────────
     `sub_dt` not equal to `data`.
     Component "Ordered": 3603 string mismatches
     args: col: Ordered | from: 1 | to: 10000 | setColumns: | compress: 0 | tot_length 10000 cols sub_dt: 1 , rows sub_dt: 10000 cols data: 1 , rows data: 10000 head sub_dt: S,MB,EN,J,KY,B,WR,EN,B,BDZ head data: S,MB,EN,J,KY,B,WR,EN,B,BDZ unequals: 3603 uneq rows sub_dt1 KY,B,KY,KY,J,B,WR,EN,B,EN,MB,MB,KY,EN,B,MB,S,EN,B,KY,BDZ,WR,B,J,MB uneq rows sub_dt2 3762,3763,3764,3765,3766,3767,3768,3769,3770,3771,3772,3773,3774,3775,3776,3778,3780,3781,3782,3783,3784,3785,3786,3787,3788 uneq rows sub_dt3 WR,S,B,J,S,EN,BDZ,S,MB,J,WR,BDZ,J,MB,KY,KY,J,WR,WR,MB,S,J,BDZ,KY,B
    
     ── 10. Failure: Single uncompressed vectors (@test_fst.R#105) ─────────────────
     `sub_dt` not equal to `data`.
     Component "Date": Mean relative difference: 0.6709352
     args: col: Date | from: 1 | to: 10000 | setColumns: | compress: 0 | tot_length 10000 cols sub_dt: 1 , rows sub_dt: 10000 cols data: 1 , rows data: 10000 head sub_dt: 1996-05-04,1986-09-13,1981-03-30,1970-10-22,1980-11-02,1972-11-07,1977-01-08,1995-03-13,1985-06-01,1994-10-25 head data: 1996-05-04,1986-09-13,1981-03-30,1970-10-22,1980-11-02,1972-11-07,1977-01-08,1995-03-13,1985-06-01,1994-10-25 unequals: 4096 uneq rows sub_dt1 1992-10-04,1981-06-10,1976-07-17,1981-11-14,1992-05-04,1972-11-10,1993-06-03,1988-12-30,1983-07-29,1972-04-01,1976-09-30,1983-02-15,1994-01-17,1986-04-09,1978-08-11,1981-07-18,1978-07-22,1995-06-19,1996-02-02,1993-07-29,1986-09-04,1981-10-14,1979-01-12,1973-03-31,1977-01-02 uneq rows sub_dt2 4097,4098,4099,4100,4101,4102,4103,4104,4105,4106,4107,4108,4109,4110,4111,4112,4113,4114,4115,4116,4117,4118,4119,4120,4121 uneq rows sub_dt3 1971-09-27,1991-10-30,1979-12-22,1979-06-06,1977-07-17,1979-08-11,1970-12-19,1984-01-14,1979-11-12,1971-07-04,1981-01-30,1987-11-14,1970-11-30,1990-09-08,1995-04-22,1972-04-04,1996-08-05,1984-02-25,1985-09-07,1970-07-21,1977-11-11,1982-01-18,1981-04-01,1994-09-26,1984-05-28
    
     ── 11. Failure: Single uncompressed vectors (@test_fst.R#105) ─────────────────
     `sub_dt` not equal to `data`.
     Component "DateDouble": Mean relative difference: 0.1813955
     args: col: DateDouble | from: 1 | to: 10000 | setColumns: | compress: 0 | tot_length 10000 cols sub_dt: 1 , rows sub_dt: 10000 cols data: 1 , rows data: 10000 head sub_dt: 2015-01-02,2015-01-03,2015-01-04,2015-01-05,2015-01-06,2015-01-07,2015-01-08,2015-01-09,2015-01-10,2015-01-11 head data: 2015-01-02,2015-01-03,2015-01-04,2015-01-05,2015-01-06,2015-01-07,2015-01-08,2015-01-09,2015-01-10,2015-01-11 unequals: 4096 uneq rows sub_dt1 2026-03-21,2026-03-22,2026-03-23,2026-03-24,2026-03-25,2026-03-26,2026-03-27,2026-03-28,2026-03-29,2026-03-30,2026-03-31,2026-04-01,2026-04-02,2026-04-03,2026-04-04,2026-04-05,2026-04-06,2026-04-07,2026-04-08,2026-04-09,2026-04-10,2026-04-11,2026-04-12,2026-04-13,2026-04-14 uneq rows sub_dt2 4097,4098,4099,4100,4101,4102,4103,4104,4105,4106,4107,4108,4109,4110,4111,4112,4113,4114,4115,4116,4117,4118,4119,4120,4121 uneq rows sub_dt3 2037-06-07,2037-06-08,2037-06-09,2037-06-10,2037-06-11,2037-06-12,2037-06-13,2037-06-14,2037-06-15,2037-06-16,2037-06-17,2037-06-18,2037-06-19,2037-06-20,2037-06-21,2037-06-22,2037-06-23,2037-06-24,2037-06-25,2037-06-26,2037-06-27,2037-06-28,2037-06-29,2037-06-30,2037-07-01
    
     ── 12. Failure: Single uncompressed vectors (@test_fst.R#105) ─────────────────
     `sub_dt` not equal to `data`.
     Component "Difftime": Mean relative difference: 0.6666125
     args: col: Difftime | from: 1 | to: 10000 | setColumns: | compress: 0 | tot_length 10000 cols sub_dt: 1 , rows sub_dt: 10000 cols data: 1 , rows data: 10000 head sub_dt: 0.999003410339355,1.99900341033936,2.99900341033936,3.99900341033936,4.99900341033936,5.99900341033936,6.99900341033936,7.99900341033936,8.99900341033936,9.99900341033936 head data: 0.999003410339355,1.99900341033936,2.99900341033936,3.99900341033936,4.99900341033936,5.99900341033936,6.99900341033936,7.99900341033936,8.99900341033936,9.99900341033936 unequals: 4096 uneq rows sub_dt1 4096.99900341034,4097.99900341034,4098.99900341034,4099.99900341034,4100.99900341034,4101.99900341034,4102.99900341034,4103.99900341034,4104.99900341034,4105.99900341034,4106.99900341034,4107.99900341034,4108.99900341034,4109.99900341034,4110.99900341034,4111.99900341034,4112.99900341034,4113.99900341034,4114.99900341034,4115.99900341034,4116.99900341034,4117.99900341034,4118.99900341034,4119.99900341034,4120.99900341034 uneq rows sub_dt2 4097,4098,4099,4100,4101,4102,4103,4104,4105,4106,4107,4108,4109,4110,4111,4112,4113,4114,4115,4116,4117,4118,4119,4120,4121 uneq rows sub_dt3 8192.99900341034,8193.99900341034,8194.99900341034,8195.99900341034,8196.99900341034,8197.99900341034,8198.99900341034,8199.99900341034,8200.99900341034,8201.99900341034,8202.99900341034,8203.99900341034,8204.99900341034,8205.99900341034,8206.99900341034,8207.99900341034,8208.99900341034,8209.99900341034,8210.99900341034,8211.99900341034,8212.99900341034,8213.99900341034,8214.99900341034,8215.99900341034,8216.99900341034
    
     ── 13. Failure: Single uncompressed vectors (@test_fst.R#105) ─────────────────
     `sub_dt` not equal to `data`.
     Component "DiffTime_int": Mean relative difference: 0.6667209
     args: col: DiffTime_int | from: 1 | to: 10000 | setColumns: | compress: 0 | tot_length 10000 cols sub_dt: 1 , rows sub_dt: 10000 cols data: 1 , rows data: 10000 head sub_dt: 0,1,2,3,4,5,6,7,8,9 head data: 0,1,2,3,4,5,6,7,8,9 unequals: 4096 uneq rows sub_dt1 4096,4097,4098,4099,4100,4101,4102,4103,4104,4105,4106,4107,4108,4109,4110,4111,4112,4113,4114,4115,4116,4117,4118,4119,4120 uneq rows sub_dt2 4097,4098,4099,4100,4101,4102,4103,4104,4105,4106,4107,4108,4109,4110,4111,4112,4113,4114,4115,4116,4117,4118,4119,4120,4121 uneq rows sub_dt3 8192,8193,8194,8195,8196,8197,8198,8199,8200,8201,8202,8203,8204,8205,8206,8207,8208,8209,8210,8211,8212,8213,8214,8215,8216
    
    
     *** caught segfault ***
     address 0, cause 'memory not mapped'
    
     Traceback:
     1: fstretrieve(fileName, columns, from, to)
     2: read_fst(path, columns, from, to, as.data.table)
     3: fstreadproxy("FactorStore/data1.fst", columns = sel_columns, from = from, to = to)
     4: test_write_read(x, compress = 30L)
     5: FUN(X[[i]], ...)
     6: lapply(X = X, FUN = FUN, ...)
     7: sapply(colNames, function(x) { test_write_read(x, compress = 30L)})
     8: eval(code, test_env)
     9: eval(code, test_env)
     10: withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error)
     11: doTryCatch(return(expr), name, parentenv, handler)
     12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
     13: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
     14: doTryCatch(return(expr), name, parentenv, handler)
     15: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), names[nh], parentenv, handlers[[nh]])
     16: tryCatchList(expr, classes, parentenv, handlers)
     17: tryCatch(withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error), error = handle_fatal, skip = function(e) { })
     18: test_code(desc, code, env = parent.frame())
     19: test_that("Single weakly compressed vectors", { sapply(colNames, function(x) { test_write_read(x, compress = 30L) })})
     20: eval(code, test_env)
     21: eval(code, test_env)
     22: withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error)
     23: doTryCatch(return(expr), name, parentenv, handler)
     24: tryCatchOne(expr, names, parentenv, handlers[[1L]])
     25: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
     26: doTryCatch(return(expr), name, parentenv, handler)
     27: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), names[nh], parentenv, handlers[[nh]])
     28: tryCatchList(expr, classes, parentenv, handlers)
     29: tryCatch(withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error), error = handle_fatal, skip = function(e) { })
     30: test_code(NULL, exprs, env)
     31: source_file(path, new.env(parent = env), chdir = TRUE, wrap = wrap)
     32: force(code)
     33: with_reporter(reporter = reporter, start_end_reporter = start_end_reporter, { lister$start_file(basename(path)) source_file(path, new.env(parent = env), chdir = TRUE, wrap = wrap) end_context() })
     34: FUN(X[[i]], ...)
     35: lapply(paths, test_file, env = env, reporter = current_reporter, start_end_reporter = FALSE, load_helpers = FALSE, wrap = wrap)
     36: force(code)
     37: with_reporter(reporter = current_reporter, results <- lapply(paths, test_file, env = env, reporter = current_reporter, start_end_reporter = FALSE, load_helpers = FALSE, wrap = wrap))
     38: test_files(paths, reporter = reporter, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, wrap = wrap)
     39: test_dir(path = test_path, reporter = reporter, env = env, filter = filter, ..., stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, wrap = wrap)
     40: test_package_dir(package = package, test_path = test_path, filter = filter, reporter = reporter, ..., stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, wrap = wrap)
     41: test_check("fst")
     An irrecoverable exception occurred. R is aborting now ...
Flavor: r-patched-solaris-x86