Last updated on 2023-12-09 04:50:51 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.4 | 294.00 | 193.47 | 487.47 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.0.4 | 265.90 | 155.44 | 421.34 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.0.4 | 705.72 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.4 | 807.11 | NOTE | |||
| r-devel-windows-x86_64 | 1.0.4 | 263.00 | 206.00 | 469.00 | NOTE | |
| r-patched-linux-x86_64 | 1.0.4 | 261.38 | 205.45 | 466.83 | NOTE | |
| r-release-linux-x86_64 | 1.0.4 | 247.32 | 198.78 | 446.10 | NOTE | |
| r-release-macos-arm64 | 1.0.4 | 173.00 | ERROR | |||
| r-release-macos-x86_64 | 1.0.4 | 214.00 | ERROR | |||
| r-release-windows-x86_64 | 1.0.4 | 336.00 | 245.00 | 581.00 | NOTE | |
| r-oldrel-macos-arm64 | 1.0.4 | 124.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 1.0.4 | 233.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 1.0.4 | 317.00 | 218.00 | 535.00 | NOTE |
Version: 1.0.4
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘MicrobeDS’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.0.4
Check: Rd files
Result: NOTE
checkRd: (-1) maltipoo_fit.Rd:72: Lost braces; missing escapes or markup?
72 | Where A = (I_N + X * Gamma * X')^{-1}, K^{-1} = Xi is a (D-1)x(D-1)
| ^
checkRd: (-1) maltipoo_fit.Rd:72: Lost braces; missing escapes or markup?
72 | Where A = (I_N + X * Gamma * X')^{-1}, K^{-1} = Xi is a (D-1)x(D-1)
| ^
checkRd: (-1) maltipoo_fit.Rd:74: Lost braces; missing escapes or markup?
74 | e^{ell_i} is a scale for that variance component and Phi^{-1} is
| ^
checkRd: (-1) maltipoo_fit.Rd:74: Lost braces; missing escapes or markup?
74 | e^{ell_i} is a scale for that variance component and Phi^{-1} is
| ^
checkRd: (-1) optimMaltipooCollapsed.Rd:110: Lost braces; missing escapes or markup?
110 | Where A = (I_N + e^{ell_1}\\*X\\*U_1\\*X' + ... + e^{ell_P}\\*X\\*U_P\\*X' ),
| ^
checkRd: (-1) optimMaltipooCollapsed.Rd:110: Lost braces; missing escapes or markup?
110 | Where A = (I_N + e^{ell_1}\\*X\\*U_1\\*X' + ... + e^{ell_P}\\*X\\*U_P\\*X' ),
| ^
checkRd: (-1) optimPibbleCollapsed.Rd:45: Lost braces; missing escapes or markup?
45 | \item{AInv}{N x N precision matrix given by (I_N + X'\emph{Gamma}X)^{-1}}
| ^
checkRd: (-1) optimPibbleCollapsed.Rd:123: Lost braces; missing escapes or markup?
123 | matrix, Gamma is a Q x Q covariance matrix, and Phi^{-1} is ALRInv_D
| ^
checkRd: (-1) orthus_fit.Rd:72: Lost braces; missing escapes or markup?
72 | Where Gamma is a Q x Q covariance matrix, and Phi^{-1} is
| ^
checkRd: (-1) pibble_fit.Rd:72: Lost braces; missing escapes or markup?
72 | Where Gamma is a Q x Q covariance matrix, and Phi^{-1} is
| ^
checkRd: (-1) uncollapsePibble.Rd:66: Lost braces; missing escapes or markup?
66 | matrix, Gamma is a Q x Q covariance matrix, and Phi^{-1} is ALRInv_D
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.0.4
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking: 'MicrobeDS', 'phyloseq'
Flavors: r-release-macos-arm64, r-release-macos-x86_64
Version: 1.0.4
Check: installed package size
Result: NOTE
installed size is 39.9Mb
sub-directories of 1Mb or more:
libs 38.3Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.0.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [8s/8s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
attr(,"class")
[1] "gg" "ggplot"
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-ilr.R:11:3'): clr plus summary works ───────────────────────────
<packageNotFoundError/error/condition>
Error in `library(phyloseq)`: there is no package called 'phyloseq'
Backtrace:
▆
1. └─base::library(phyloseq) at test-ilr.R:11:2
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 101 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-arm64
Version: 1.0.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [14s/30s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
attr(,"class")
[1] "gg" "ggplot"
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-ilr.R:11:3'): clr plus summary works ───────────────────────────
<packageNotFoundError/error/condition>
Error in `library(phyloseq)`: there is no package called 'phyloseq'
Backtrace:
▆
1. └─base::library(phyloseq) at test-ilr.R:11:2
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 101 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64