CRAN Package Check Results for Package dnapath

Last updated on 2020-10-27 20:47:38 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.6.4 52.04 361.42 413.46 OK
r-devel-linux-x86_64-debian-gcc 0.6.4 38.96 262.93 301.89 OK
r-devel-linux-x86_64-fedora-clang 0.6.4 457.92 WARN
r-devel-linux-x86_64-fedora-gcc 0.6.4 462.85 WARN
r-devel-windows-ix86+x86_64 0.6.4 110.00 606.00 716.00 WARN
r-patched-linux-x86_64 0.6.4 WARN
r-patched-solaris-x86 0.6.4 555.40 WARN
r-release-linux-x86_64 0.6.4 46.25 314.28 360.53 WARN
r-release-macos-x86_64 0.6.4 ERROR
r-release-windows-ix86+x86_64 0.6.4 82.00 476.00 558.00 OK
r-oldrel-macos-x86_64 0.6.4 ERROR
r-oldrel-windows-ix86+x86_64 0.6.4 96.00 578.00 674.00 OK

Check Details

Version: 0.6.4
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘introduction_to_dnapath.Rmd’ using rmarkdown
    Quitting from lines 214-217 (introduction_to_dnapath.Rmd)
    Error: processing vignette 'introduction_to_dnapath.Rmd' failed with diagnostics:
    SSL certificate problem: unable to get local issuer certificate
    --- failed re-building ‘introduction_to_dnapath.Rmd’
    
    --- re-building ‘package_data.Rmd’ using rmarkdown
    
    ── Column specification ────────────────────────────────────────────────────────
    cols(
     .default = col_character()
    )
    ℹ Use `spec()` for the full column specifications.
    
    
    ── Column specification ────────────────────────────────────────────────────────
    cols(
     .default = col_double(),
     attrib_name = col_character()
    )
    ℹ Use `spec()` for the full column specifications.
    
    Quitting from lines 234-239 (package_data.Rmd)
    Error: processing vignette 'package_data.Rmd' failed with diagnostics:
    SSL certificate problem: unable to get local issuer certificate
    --- failed re-building ‘package_data.Rmd’
    
    SUMMARY: processing the following files failed:
     ‘introduction_to_dnapath.Rmd’ ‘package_data.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.6.4
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘introduction_to_dnapath.Rmd’ using rmarkdown
    --- finished re-building ‘introduction_to_dnapath.Rmd’
    
    --- re-building ‘package_data.Rmd’ using rmarkdown
    
    ── Column specification ────────────────────────────────────────────────────────
    cols(
     .default = col_character()
    )
    ℹ Use `spec()` for the full column specifications.
    
    
    ── Column specification ────────────────────────────────────────────────────────
    cols(
     .default = col_double(),
     attrib_name = col_character()
    )
    ℹ Use `spec()` for the full column specifications.
    
    Quitting from lines 234-239 (package_data.Rmd)
    Error: processing vignette 'package_data.Rmd' failed with diagnostics:
    SSL certificate problem: unable to get local issuer certificate
    --- failed re-building ‘package_data.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘package_data.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 0.6.4
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building 'introduction_to_dnapath.Rmd' using rmarkdown
    Quitting from lines 214-217 (introduction_to_dnapath.Rmd)
    Error: processing vignette 'introduction_to_dnapath.Rmd' failed with diagnostics:
    Timeout was reached: [useast.ensembl.org:8443] Connection timed out after 10008 milliseconds
    --- failed re-building 'introduction_to_dnapath.Rmd'
    
    --- re-building 'package_data.Rmd' using rmarkdown
    
    -- Column specification --------------------------------------------------------
    cols(
     .default = col_character()
    )
    i Use `spec()` for the full column specifications.
    
    
    -- Column specification --------------------------------------------------------
    cols(
     .default = col_double(),
     attrib_name = col_character()
    )
    i Use `spec()` for the full column specifications.
    
    --- finished re-building 'package_data.Rmd'
    
    SUMMARY: processing the following file failed:
     'introduction_to_dnapath.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 0.6.4
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘introduction_to_dnapath.Rmd’ using rmarkdown
    Quitting from lines 214-217 (introduction_to_dnapath.Rmd)
    Error: processing vignette 'introduction_to_dnapath.Rmd' failed with diagnostics:
    server certificate verification failed. CAfile: none CRLfile: none
    --- failed re-building ‘introduction_to_dnapath.Rmd’
    
    --- re-building ‘package_data.Rmd’ using rmarkdown
    
    ── Column specification ────────────────────────────────────────────────────────
    cols(
     .default = col_character()
    )
    ℹ Use `spec()` for the full column specifications.
    
    
    ── Column specification ────────────────────────────────────────────────────────
    cols(
     .default = col_double(),
     attrib_name = col_character()
    )
    ℹ Use `spec()` for the full column specifications.
    
    --- finished re-building ‘package_data.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘introduction_to_dnapath.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-linux-x86_64

Version: 0.6.4
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘introduction_to_dnapath.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘introduction_to_dnapath.Rmd’
    
    --- re-building ‘package_data.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    ── Column specification ────────────────────────────────────────────────────────
    cols(
     .default = col_character()
    )
    ℹ Use `spec()` for the full column specifications.
    
    
    ── Column specification ────────────────────────────────────────────────────────
    cols(
     .default = col_double(),
     attrib_name = col_character()
    )
    ℹ Use `spec()` for the full column specifications.
    
    Quitting from lines 234-239 (package_data.Rmd)
    Error: processing vignette 'package_data.Rmd' failed with diagnostics:
    SSL certificate problem: unable to get local issuer certificate
    --- failed re-building ‘package_data.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘package_data.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.6.4
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘introduction_to_dnapath.Rmd’ using rmarkdown
    --- finished re-building ‘introduction_to_dnapath.Rmd’
    
    --- re-building ‘package_data.Rmd’ using rmarkdown
    
    ── Column specification ────────────────────────────────────────────────────────
    cols(
     .default = col_character()
    )
    ℹ Use `spec()` for the full column specifications.
    
    
    ── Column specification ────────────────────────────────────────────────────────
    cols(
     .default = col_double(),
     attrib_name = col_character()
    )
    ℹ Use `spec()` for the full column specifications.
    
    Quitting from lines 234-239 (package_data.Rmd)
    Error: processing vignette 'package_data.Rmd' failed with diagnostics:
    server certificate verification failed. CAfile: none CRLfile: none
    --- failed re-building ‘package_data.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘package_data.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-linux-x86_64

Version: 0.6.4
Check: package dependencies
Result: ERROR
    Package required but not available: ‘reactome.db’
    
    Package suggested but not available for checking: ‘GENIE3’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64