CRAN Package Check Results for Package clustree

Last updated on 2019-04-22 19:48:35 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.4.0 6.22 132.63 138.85 OK
r-devel-linux-x86_64-debian-gcc 0.4.0 5.13 103.68 108.81 OK
r-devel-linux-x86_64-fedora-clang 0.4.0 177.38 OK
r-devel-linux-x86_64-fedora-gcc 0.4.0 152.06 OK
r-devel-windows-ix86+x86_64 0.4.0 21.00 150.00 171.00 OK
r-patched-linux-x86_64 0.4.0 6.34 126.99 133.33 OK
r-patched-solaris-x86 0.4.0 245.20 OK
r-release-linux-x86_64 0.4.0 5.57 130.53 136.10 OK
r-release-windows-ix86+x86_64 0.4.0 9.00 144.00 153.00 OK
r-release-osx-x86_64 0.4.0 ERROR
r-oldrel-windows-ix86+x86_64 0.3.0 11.00 214.00 225.00 ERROR
r-oldrel-osx-x86_64 0.3.0 ERROR

Check Details

Version: 0.4.0
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘SingleCellExperiment’
Flavor: r-release-osx-x86_64

Version: 0.4.0
Check: tests
Result: ERROR
     Running ‘spelling.R’ [0s/0s]
     Running ‘testthat.R’ [12s/12s]
    Running the tests in ‘tests/testthat.R’ failed.
    Last 13 lines of output:
     > test_check("clustree")
     ── 1. Error: show_axis works (@test-clustree.R#93) ────────────────────────────
     object 'sce' not found
     1: expect_is(clustree(sce, prefix = "sc3_", suffix = "_clusters", show_axis = TRUE),
     c("gg", "ggplot")) at testthat/test-clustree.R:93
     2: quasi_label(enquo(object), label)
     3: eval_bare(get_expr(quo), get_env(quo))
     4: clustree(sce, prefix = "sc3_", suffix = "_clusters", show_axis = TRUE)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 49 SKIPPED: 4 FAILED: 1
     1. Error: show_axis works (@test-clustree.R#93)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-release-osx-x86_64

Version: 0.3.0
Check: tests
Result: ERROR
     Running 'spelling.R' [0s]
     Running 'testthat.R' [10s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(clustree)
     Loading required package: ggraph
     Loading required package: ggplot2
     >
     > test_check("clustree")
     -- 1. Error: (unknown) (@test-clustree-overlay.R#10) --------------------------
     could not find function "SetDimReduction"
     1: .handleSimpleError(function (e)
     {
     handled <<- TRUE
     test_error <<- e
     options(expressions = expressions_opt_new)
     on.exit(options(expressions = expressions_opt), add = TRUE)
     e$expectation_calls <- frame_calls(11, 2)
     test_error <<- e
     register_expectation(e)
     e$handled <- TRUE
     test_error <<- e
     }, "could not find function \"SetDimReduction\"", quote(SetDimReduction(seurat, "TSNE",
     "cell.embeddings", sc_example$tsne))) at testthat/test-clustree-overlay.R:10
     2: eval(code, test_env)
    
     -- 2. Error: (unknown) (@test-clustree.R#13) ----------------------------------
     could not find function "SetDimReduction"
     1: .handleSimpleError(function (e)
     {
     handled <<- TRUE
     test_error <<- e
     options(expressions = expressions_opt_new)
     on.exit(options(expressions = expressions_opt), add = TRUE)
     e$expectation_calls <- frame_calls(11, 2)
     test_error <<- e
     register_expectation(e)
     e$handled <- TRUE
     test_error <<- e
     }, "could not find function \"SetDimReduction\"", quote(SetDimReduction(seurat, "TSNE",
     "cell.embeddings", sc_example$tsne))) at testthat/test-clustree.R:13
     2: eval(code, test_env)
    
     == testthat results ===========================================================
     OK: 27 SKIPPED: 0 FAILED: 2
     1. Error: (unknown) (@test-clustree-overlay.R#10)
     2. Error: (unknown) (@test-clustree.R#13)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-oldrel-windows-ix86+x86_64

Version: 0.3.0
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Quitting from lines 242-247 (clustree.Rmd)
    Error: processing vignette 'clustree.Rmd' failed with diagnostics:
    could not find function "SetDimReduction"
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64

Version: 0.3.0
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘SingleCellExperiment’
Flavor: r-oldrel-osx-x86_64

Version: 0.3.0
Check: tests
Result: ERROR
     Running ‘spelling.R’ [0s/0s]
     Running ‘testthat.R’ [13s/13s]
    Running the tests in ‘tests/testthat.R’ failed.
    Last 13 lines of output:
     > test_check("clustree")
     ── 1. Error: show_axis works (@test-clustree.R#79) ────────────────────────────
     object 'sce' not found
     1: expect_is(clustree(sce, prefix = "sc3_", suffix = "_clusters", show_axis = TRUE),
     c("gg", "ggplot")) at testthat/test-clustree.R:79
     2: quasi_label(enquo(object), label)
     3: eval_bare(get_expr(quo), get_env(quo))
     4: clustree(sce, prefix = "sc3_", suffix = "_clusters", show_axis = TRUE)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 49 SKIPPED: 4 FAILED: 1
     1. Error: show_axis works (@test-clustree.R#79)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-oldrel-osx-x86_64