Last updated on 2022-06-25 11:52:31 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.9.4 | 10.25 | 183.42 | 193.67 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 0.2.9.4 | 7.75 | 129.82 | 137.57 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 0.2.9.4 | 242.38 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 0.2.9.4 | 245.47 | NOTE | |||
| r-devel-windows-x86_64 | 0.2.9.4 | 56.00 | 211.00 | 267.00 | NOTE | |
| r-patched-linux-x86_64 | 0.2.9.4 | 8.75 | 167.51 | 176.26 | NOTE | |
| r-release-linux-x86_64 | 0.2.9.4 | 6.41 | 168.22 | 174.63 | NOTE | |
| r-release-macos-arm64 | 0.2.9.4 | 59.00 | ERROR | |||
| r-release-macos-x86_64 | 0.2.9.4 | 96.00 | NOTE | |||
| r-release-windows-x86_64 | 0.2.9.4 | 55.00 | 203.00 | 258.00 | NOTE | |
| r-oldrel-macos-arm64 | 0.2.9.4 | 48.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 0.2.9.4 | 86.00 | NOTE | |||
| r-oldrel-windows-ix86+x86_64 | 0.2.9.4 | 21.00 | 201.00 | 222.00 | NOTE |
Version: 0.2.9.4
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: 'glmmADMB'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 0.2.9.4
Check: examples
Result: ERROR
Running examples in ‘broom.mixed-Ex.R’ failed
The error most likely occurred in:
> ### Name: glmmTMB_tidiers
> ### Title: Tidying methods for glmmTMB models
> ### Aliases: glmmTMB_tidiers tidy.glmmTMB augment.glmmTMB glance.glmmTMB
>
> ### ** Examples
>
> if (require("glmmTMB") && require("lme4")
+ ## &&
+ ## make sure package versions are OK
+ ## checkDepPackageVersion(dep_pkg = "TMB",
+ ## this_pkg = "glmmTMB",
+ ## warn = FALSE) &&
+ ## checkDepPackageVersion(dep_pkg = "Matrix",
+ ## this_pkg = "TMB",
+ ## warn = FALSE)
+ )
+ {
+ data("sleepstudy",package="lme4")
+ ## original model:
+ ## Not run:
+ ##D lmm1 <- glmmTMB(Reaction ~ Days + (Days | Subject), sleepstudy)
+ ##D
+ ## End(Not run)
+ ## load stored object
+ L <- load(system.file("extdata","glmmTMB_example.rda",package="broom.mixed"))
+ for (obj in L) {
+ assign(obj, glmmTMB::up2date(get(obj)))
+ }
+ tidy(lmm1)
+ tidy(lmm1, effects = "fixed")
+ tidy(lmm1, effects = "fixed", conf.int=TRUE)
+ tidy(lmm1, effects = "fixed", conf.int=TRUE, conf.method="uniroot")
+ ## FIX: tidy(lmm1, effects = "ran_vals", conf.int=TRUE)
+ head(augment(lmm1, sleepstudy))
+ glance(lmm1)
+
+ ## original model:
+ ## glmm1 <- glmmTMB(incidence/size ~ period + (1 | herd),
+ ## data = cbpp, family = binomial, weights=size)
+ tidy(glmm1)
+ tidy(glmm1, effects = "fixed")
+ tidy(glmm1, effects = "fixed", exponentiate=TRUE)
+ tidy(glmm1, effects = "fixed", conf.int=TRUE, exponentiate=TRUE)
+ head(augment(glmm1, cbpp))
+ head(augment(glmm1, cbpp, type.residuals="pearson"))
+ glance(glmm1)
+ ## Not run:
+ ##D ## profile CIs - a little bit slower but more accurate
+ ##D tidy(glmm1, effects = "fixed", conf.int=TRUE, exponentiate=TRUE, conf.method="profile")
+ ## End(Not run)
+ }
Loading required package: glmmTMB
Warning in checkDepPackageVersion(dep_pkg = "TMB") :
Package version inconsistency detected.
glmmTMB was built with TMB version 1.7.22
Current TMB version is 1.9.0
Please re-install glmmTMB from source or restore original ‘TMB’ package (see '?reinstalling' for more information)
Loading required package: lme4
Loading required package: Matrix
Error in .Call("getParameterOrder", data, parameters, reportenv, control, :
Incorrect number of arguments (4), expecting 3 for 'getParameterOrder'
Calls: assign ... with.default -> eval -> eval -> <Anonymous> -> getParameterOrder
Execution halted
Flavor: r-release-macos-arm64
Version: 0.2.9.4
Check: tests
Result: ERROR
Running ‘test-all.R’ [14s/15s]
Running the tests in ‘tests/test-all.R’ failed.
Last 13 lines of output:
PACKAGE = DLL)`: Incorrect number of arguments (4), expecting 3 for 'getParameterOrder'
Backtrace:
▆
1. ├─base::assign(obj, glmmTMB::up2date(get(obj))) at test-glmmTMB.R:20:4
2. └─glmmTMB::up2date(get(obj))
3. ├─base::with(...)
4. └─base::with.default(...)
5. └─base::eval(substitute(expr), data, enclos = parent.frame())
6. └─base::eval(substitute(expr), data, enclos = parent.frame())
7. └─TMB::MakeADFun(...)
8. └─TMB:::getParameterOrder(data, parameters, new.env(), DLL = DLL)
[ FAIL 2 | WARN 8 | SKIP 1 | PASS 196 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-arm64