CRAN Package Check Results for Package betafam

Last updated on 2019-02-20 16:49:34 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0 1.66 18.44 20.10 NOTE
r-devel-linux-x86_64-debian-gcc 1.0 1.35 14.97 16.32 NOTE
r-devel-linux-x86_64-fedora-clang 1.0 26.44 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0 26.24 NOTE
r-devel-windows-ix86+x86_64 1.0 5.00 27.00 32.00 NOTE
r-patched-linux-x86_64 1.0 NOTE
r-patched-solaris-x86 1.0 37.80 NOTE
r-release-linux-x86_64 1.0 NOTE
r-release-windows-ix86+x86_64 1.0 2.00 26.00 28.00 NOTE
r-release-osx-x86_64 1.0 NOTE
r-oldrel-windows-ix86+x86_64 1.0 2.00 25.00 27.00 NOTE
r-oldrel-osx-x86_64 1.0 NOTE

Check Details

Version: 1.0
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘extdata’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.0
Check: R code for possible problems
Result: NOTE
    betafam: no visible global function definition for ‘pnorm’
    betafam: no visible global function definition for ‘pchisq’
    betafam: no visible global function definition for ‘lm’
    betafam: no visible global function definition for ‘coefficients’
    betafam: no visible global function definition for ‘glm.fit’
    betafam: no visible global function definition for ‘gaussian’
    betafam: no visible global function definition for ‘glmnet’
    Undefined global functions or variables:
     coefficients gaussian glm.fit glmnet lm pchisq pnorm
    Consider adding
     importFrom("stats", "coefficients", "gaussian", "glm.fit", "lm",
     "pchisq", "pnorm")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.0
Check: Rd line widths
Result: NOTE
    Rd file 'betafam.Rd':
     \usage lines wider than 90 characters:
     betafam(ped,group.threshold=-1,fix.group.index=NULL, fix.weight=NULL,mute.SMM=TRUE,trait=c("binary","qtl"),LC.test=c("LC.true","LC","si ... [TRUNCATED]
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64