CRAN Package Check Results for Package bPeaks

Last updated on 2020-04-04 13:52:10 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2 2.85 30.74 33.59 NOTE
r-devel-linux-x86_64-debian-gcc 1.2 2.29 24.85 27.14 NOTE
r-devel-linux-x86_64-fedora-clang 1.2 42.75 NOTE
r-devel-linux-x86_64-fedora-gcc 1.2 40.90 NOTE
r-devel-windows-ix86+x86_64 1.2 6.00 57.00 63.00 NOTE
r-devel-windows-ix86+x86_64-gcc8 1.2 6.00 42.00 48.00 NOTE
r-patched-linux-x86_64 1.2 2.91 30.10 33.01 NOTE
r-patched-solaris-x86 1.2 73.10 NOTE
r-release-linux-x86_64 1.2 2.35 28.63 30.98 NOTE
r-release-windows-ix86+x86_64 1.2 4.00 55.00 59.00 NOTE
r-release-osx-x86_64 1.2 NOTE
r-oldrel-windows-ix86+x86_64 1.2 2.00 34.00 36.00 NOTE
r-oldrel-osx-x86_64 1.2 NOTE

Check Details

Version: 1.2
Check: R code for possible problems
Result: NOTE
    bPeaksAnalysis: no visible global function definition for 'write.table'
    dataReading: no visible global function definition for 'read.table'
    dataSmoothing: no visible global function definition for 'filter'
    peakDetection: no visible global function definition for 'quantile'
    peakDetection: no visible global function definition for 'pdf'
    peakDetection: no visible global function definition for 'par'
    peakDetection: no visible global function definition for 'text'
    peakDetection: no visible global function definition for 'abline'
    peakDetection: no visible global function definition for 'points'
    peakDetection: no visible global function definition for 'dev.off'
    peakDetection: no visible global function definition for 'write.table'
    peakDrawing: no visible global function definition for 'par'
    peakDrawing: no visible global function definition for 'abline'
    peakLocation: no visible global function definition for 'read.table'
    peakLocation: no visible global function definition for 'pdf'
    peakLocation: no visible global function definition for 'barplot'
    peakLocation: no visible global function definition for 'dev.off'
    peakLocation: no visible global function definition for 'write.table'
    Undefined global functions or variables:
     abline barplot dev.off filter par pdf points quantile read.table text
     write.table
    Consider adding
     importFrom("grDevices", "dev.off", "pdf")
     importFrom("graphics", "abline", "barplot", "par", "points", "text")
     importFrom("stats", "filter", "quantile")
     importFrom("utils", "read.table", "write.table")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-patched-linux-x86_64, r-patched-solaris-x86

Version: 1.2
Check: for non-standard things in the check directory
Result: NOTE
    Found the following files/directories:
     'bPeaks_example-chrIV.bed' 'bPeaks_example-chrIV_bPeaksDrawing.pdf'
     'bPeaks_example-chrIV_dataSummary.pdf'
     'bPeaks_example_bPeaks_allGenome.bed'
     'bPeaks_example_bPeaks_parameterSummary.txt'
     'bPeaks_example_chrIV.bed' 'bPeaks_example_chrIV_bPeaksDrawing.pdf'
     'bPeaks_example_chrIV_dataSummary.pdf'
     'bPeaks_example_peakLocation.pdf'
     'bPeaks_example_peakLocation_inCDS.txt'
     'bPeaks_example_peakLocation_inPromoters.txt' 'peakStats.Robject'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86

Version: 1.2
Check: R code for possible problems
Result: NOTE
    bPeaksAnalysis: no visible global function definition for ‘write.table’
    dataReading: no visible global function definition for ‘read.table’
    dataSmoothing: no visible global function definition for ‘filter’
    peakDetection: no visible global function definition for ‘quantile’
    peakDetection: no visible global function definition for ‘pdf’
    peakDetection: no visible global function definition for ‘par’
    peakDetection: no visible global function definition for ‘plot’
    peakDetection: no visible global function definition for ‘text’
    peakDetection: no visible global function definition for ‘abline’
    peakDetection: no visible global function definition for ‘points’
    peakDetection: no visible global function definition for ‘dev.off’
    peakDetection: no visible global function definition for ‘write.table’
    peakDrawing: no visible global function definition for ‘par’
    peakDrawing: no visible global function definition for ‘plot’
    peakDrawing: no visible global function definition for ‘abline’
    peakLocation: no visible global function definition for ‘read.table’
    peakLocation: no visible global function definition for ‘pdf’
    peakLocation: no visible global function definition for ‘barplot’
    peakLocation: no visible global function definition for ‘dev.off’
    peakLocation: no visible global function definition for ‘write.table’
    Undefined global functions or variables:
     abline barplot dev.off filter par pdf plot points quantile read.table
     text write.table
    Consider adding
     importFrom("grDevices", "dev.off", "pdf")
     importFrom("graphics", "abline", "barplot", "par", "plot", "points",
     "text")
     importFrom("stats", "filter", "quantile")
     importFrom("utils", "read.table", "write.table")
    to your NAMESPACE file.
Flavors: r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64