CRAN Package Check Results for Package SpaDES.core

Last updated on 2021-02-25 01:49:43 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.6 38.19 315.03 353.22 OK
r-devel-linux-x86_64-debian-gcc 1.0.6 33.01 236.78 269.79 OK
r-devel-linux-x86_64-fedora-clang 1.0.6 450.26 OK
r-devel-linux-x86_64-fedora-gcc 1.0.6 415.24 OK
r-devel-windows-ix86+x86_64 1.0.5 52.00 264.00 316.00 OK
r-patched-linux-x86_64 1.0.6 34.74 302.97 337.71 OK
r-patched-solaris-x86 1.0.6 565.80 WARN
r-release-linux-x86_64 1.0.6 34.88 300.66 335.54 OK
r-release-macos-x86_64 1.0.5 ERROR
r-release-windows-ix86+x86_64 1.0.5 75.00 353.00 428.00 OK
r-oldrel-macos-x86_64 1.0.6 WARN
r-oldrel-windows-ix86+x86_64 1.0.5 48.00 254.00 302.00 OK

Check Details

Version: 1.0.6
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘i-introduction.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘i-introduction.Rmd’
    
    --- re-building ‘ii-modules.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'magrittr'
    
    The following object is masked from 'package:raster':
    
     extract
    
    Setting:
     options(
     spades.modulePath = '/home/ripley/R/Lib32/SpaDES.core/sampleModules'
     )
    Paths set to:
     options(
     rasterTmpDir = '/tmp/Rtmp6Vaidr/working_dir/RtmpfhaGLn/raster'
     reproducible.cachePath = '/tmp/Rtmp6Vaidr/working_dir/RtmpfhaGLn/Require/cache'
     spades.inputPath = '/tmp/RtmpZOaq5L/SpaDES/inputs'
     spades.outputPath = '/tmp/RtmpZOaq5L/SpaDES/outputs'
     spades.modulePath = '/home/ripley/R/Lib32/SpaDES.core/sampleModules'
     )
    2021-02-20 10:58:50 INFO:: total elpsd: 0.011 secs | 0 checkpoint init 0
    2021-02-20 10:58:50 INFO:: total elpsd: 0.028 secs | 0 save init 0
    2021-02-20 10:58:50 INFO:: total elpsd: 0.037 secs | 0 progress init 0
    2021-02-20 10:58:50 INFO:: total elpsd: 0.046 secs | 0 load init 0
    2021-02-20 10:58:50 INFO:: total elpsd: 0.054 secs | 0 randomLandscapes init
    2021-02-20 10:58:52 INFO:: total elpsd: 1.3 secs | 0 fireSpread init 1
    2021-02-20 10:58:52 INFO:: total elpsd: 1.3 secs | 0 caribouMovement init 1
    2021-02-20 10:58:52 INFO:: total elpsd: 1.4 secs | 0 fireSpread burn 5
    2021-02-20 10:58:52 INFO:: total elpsd: 1.8 secs | 0 fireSpread stats 5
    2021-02-20 10:58:52 INFO:: total elpsd: 1.8 secs | 0 randomLandscapes plot 1
    2021-02-20 10:58:53 INFO:: total elpsd: 2.5 secs | 0 fireSpread plot.init 10
    2021-02-20 10:58:53 INFO:: total elpsd: 3 secs | 0.08333 caribouMovement plo
    2021-02-20 10:58:54 INFO:: total elpsd: 3.2 secs | 0.1667 caribouMovement pl
    2021-02-20 10:58:54 INFO:: total elpsd: 3.4 secs | 0.25 caribouMovement plot
    2021-02-20 10:58:54 INFO:: total elpsd: 3.6 secs | 0.3333 caribouMovement pl
    2021-02-20 10:58:54 INFO:: total elpsd: 3.8 secs | 0.4167 caribouMovement pl
    2021-02-20 10:58:54 INFO:: total elpsd: 4 secs | 0.5 caribouMovement plot 10
    2021-02-20 10:58:55 INFO:: total elpsd: 4.3 secs | 0.5833 caribouMovement pl
    2021-02-20 10:58:55 INFO:: total elpsd: 4.6 secs | 0.6667 caribouMovement pl
    2021-02-20 10:58:55 INFO:: total elpsd: 4.8 secs | 0.75 caribouMovement plot
    2021-02-20 10:58:55 INFO:: total elpsd: 5 secs | 0.8333 caribouMovement plot
    2021-02-20 10:58:56 INFO:: total elpsd: 5.3 secs | 0.9167 caribouMovement pl
    2021-02-20 10:58:56 INFO:: total elpsd: 5.6 secs | 1 caribouMovement move 5
    2021-02-20 10:58:56 INFO:: total elpsd: 5.6 secs | 1 fireSpread burn 5
    2021-02-20 10:58:58 INFO:: total elpsd: 7.7 secs | 1 fireSpread stats 5
    2021-02-20 10:58:58 INFO:: total elpsd: 7.7 secs | 1 caribouMovement plot 10
    2021-02-20 10:58:58 INFO:: total elpsd: 7.9 secs | 1.083 caribouMovement mov
    2021-02-20 10:58:58 INFO:: total elpsd: 8 secs | 1.083 caribouMovement plot
    2021-02-20 10:58:59 INFO:: total elpsd: 8.3 secs | 1.167 caribouMovement mov
    2021-02-20 10:58:59 INFO:: total elpsd: 8.3 secs | 1.167 caribouMovement plo
    2021-02-20 10:58:59 INFO:: total elpsd: 8.6 secs | 1.25 caribouMovement move
    2021-02-20 10:58:59 INFO:: total elpsd: 8.6 secs | 1.25 caribouMovement plot
    2021-02-20 10:58:59 INFO:: total elpsd: 8.9 secs | 1.333 caribouMovement mov
    2021-02-20 10:58:59 INFO:: total elpsd: 8.9 secs | 1.333 caribouMovement plo
    2021-02-20 10:58:59 INFO:: total elpsd: 9.1 secs | 1.417 caribouMovement mov
    2021-02-20 10:59:00 INFO:: total elpsd: 9.1 secs | 1.417 caribouMovement plo
    2021-02-20 10:59:00 INFO:: total elpsd: 9.3 secs | 1.5 caribouMovement move
    2021-02-20 10:59:00 INFO:: total elpsd: 9.3 secs | 1.5 caribouMovement plot
    2021-02-20 10:59:00 INFO:: total elpsd: 9.9 secs | 1.583 caribouMovement mov
    2021-02-20 10:59:00 INFO:: total elpsd: 10 secs | 1.583 caribouMovement plot
    2021-02-20 10:59:01 INFO:: total elpsd: 10 secs | 1.667 caribouMovement move
    2021-02-20 10:59:01 INFO:: total elpsd: 10 secs | 1.667 caribouMovement plot
    2021-02-20 10:59:01 INFO:: total elpsd: 11 secs | 1.75 caribouMovement move
    2021-02-20 10:59:01 INFO:: total elpsd: 11 secs | 1.75 caribouMovement plot
    2021-02-20 10:59:01 INFO:: total elpsd: 11 secs | 1.833 caribouMovement move
    2021-02-20 10:59:01 INFO:: total elpsd: 11 secs | 1.833 caribouMovement plot
    2021-02-20 10:59:02 INFO:: total elpsd: 11 secs | 1.917 caribouMovement move
    2021-02-20 10:59:02 INFO:: total elpsd: 11 secs | 1.917 caribouMovement plot
    2021-02-20 10:59:02 INFO:: total elpsd: 12 secs | 2 fireSpread burn 5
    2021-02-20 10:59:02 INFO:: total elpsd: 12 secs | 2 caribouMovement move 5
    2021-02-20 10:59:02 INFO:: total elpsd: 12 secs | 2 fireSpread stats 5
    2021-02-20 10:59:02 INFO:: total elpsd: 12 secs | 2 caribouMovement plot 10
    simList saved in
     SpaDES.core:::.pkgEnv$.sim
    It will be deleted at next spades() call.
    Quitting from lines 389-391 (ii-modules.Rmd)
    Error: processing vignette 'ii-modules.Rmd' failed with diagnostics:
    there is no package called 'webshot'
    --- failed re-building ‘ii-modules.Rmd’
    
    --- re-building ‘iii-cache.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'raster'
    
    The following object is masked from 'package:magrittr':
    
     extract
    
    Loading required package: quickPlot
    
    Attaching package: 'SpaDES.core'
    
    The following objects are masked from 'package:stats':
    
     end, start
    
    The following object is masked from 'package:utils':
    
     citation
    
    Setting:
     options(
     spades.modulePath = '/home/ripley/R/Lib32/SpaDES.core/sampleModules'
     )
    Paths set to:
     options(
     rasterTmpDir = '/tmp/Rtmp6Vaidr/working_dir/Rtmpo6a4pr/raster'
     reproducible.cachePath = '/tmp/Rtmp6Vaidr/working_dir/Rtmpo6a4pr/Require/cache'
     spades.inputPath = '/tmp/RtmpZOaq5L/SpaDES/inputs'
     spades.outputPath = '/tmp/RtmpZOaq5L/SpaDES/outputs'
     spades.modulePath = '/home/ripley/R/Lib32/SpaDES.core/sampleModules'
     )
    Loading required package: RColorBrewer
    --- finished re-building ‘iii-cache.Rmd’
    
    --- re-building ‘iv-advanced.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘iv-advanced.Rmd’
    
    --- re-building ‘v-automated-testing.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘v-automated-testing.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘ii-modules.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86

Version: 1.0.5
Check: tests
Result: ERROR
     Running ‘test-all.R’ [31s/33s]
    Running the tests in ‘tests/test-all.R’ failed.
    Last 13 lines of output:
     6. │ └─raster::getValues(x, tr$row[i], tr$nrows[i])
     7. │ └─raster:::.local(x, row, nrows, ...)
     8. │ └─raster:::.readRasterBrickValues(x, row, nrows)
     9. │ └─raster:::getBilData(...)
     10. └─base::.handleSimpleError(...)
     11. └─base:::h(simpleError(msg, call))
    
     [ FAIL 6 | WARN 0 | SKIP 18 | PASS 520 ]
     Error: Test failures
     In addition: Warning messages:
     1: In for (i in seq_len(n)) { :
     closing unused connection 5 (/Volumes/Temp/tmp/RtmprA5R9d/Require/RuduTlbgckC/xCpMtqK.gri)
     2: In for (i in seq_len(n)) { :
     closing unused connection 4 (/Volumes/Temp/tmp/RtmprA5R9d/DFtxYO/xCpMtqK.gri)
     Execution halted
Flavor: r-release-macos-x86_64

Version: 1.0.5
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘i-introduction.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘i-introduction.Rmd’
    
    --- re-building ‘ii-modules.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'igraph'
    
    The following objects are masked from 'package:stats':
    
     decompose, spectrum
    
    The following object is masked from 'package:base':
    
     union
    
    Loading required package: quickPlot
    Loading required package: reproducible
    
    Attaching package: 'SpaDES.core'
    
    The following objects are masked from 'package:stats':
    
     end, start
    
    The following object is masked from 'package:utils':
    
     citation
    
    Loading required package: SpaDES.tools
    Loading required package: RandomFields
    Loading required package: sp
    Loading required package: RandomFieldsUtils
    
    Attaching package: 'RandomFields'
    
    The following object is masked from 'package:RandomFieldsUtils':
    
     RFoptions
    
    Setting:
     options(
     spades.modulePath = '/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/SpaDES.core.Rcheck/SpaDES.core/sampleModules'
     )
    Paths set to:
     options(
     rasterTmpDir = '/Volumes/Temp/tmp/RtmpUONekH/raster'
     reproducible.cachePath = '/Volumes/Temp/tmp/RtmpUONekH/Require/cache'
     spades.inputPath = '/Volumes/Temp/tmp/RtmpcPAYST/SpaDES/inputs'
     spades.outputPath = '/Volumes/Temp/tmp/RtmpcPAYST/SpaDES/outputs'
     spades.modulePath = '/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/SpaDES.core.Rcheck/SpaDES.core/sampleModules'
     )
    Loading required package: RColorBrewer
    Loading required package: raster
    2021-02-19 06:58:42 INFO:: total elpsd: 0.003 secs | 0 checkpoint init 0
    2021-02-19 06:58:42 INFO:: total elpsd: 0.0078 secs | 0 save init 0
    2021-02-19 06:58:42 INFO:: total elpsd: 0.011 secs | 0 progress init 0
    2021-02-19 06:58:42 INFO:: total elpsd: 0.014 secs | 0 load init 0
    2021-02-19 06:58:42 INFO:: total elpsd: 0.016 secs | 0 randomLandscapes init
    2021-02-19 06:58:42 INFO:: total elpsd: 0.29 secs | 0 fireSpread init 1
    2021-02-19 06:58:42 INFO:: total elpsd: 0.3 secs | 0 caribouMovement init 1
    2021-02-19 06:58:42 INFO:: total elpsd: 0.31 secs | 0 fireSpread burn 5
    2021-02-19 06:58:43 INFO:: total elpsd: 0.39 secs | 0 fireSpread stats 5
    2021-02-19 06:58:43 INFO:: total elpsd: 0.39 secs | 0 randomLandscapes plot
    2021-02-19 06:58:43 INFO:: total elpsd: 0.52 secs | 0 fireSpread plot.init 1
    2021-02-19 06:58:43 INFO:: total elpsd: 0.62 secs | 0.08333 caribouMovement
    2021-02-19 06:58:43 INFO:: total elpsd: 0.68 secs | 0.1667 caribouMovement p
    2021-02-19 06:58:43 INFO:: total elpsd: 0.74 secs | 0.25 caribouMovement plo
    2021-02-19 06:58:43 INFO:: total elpsd: 0.8 secs | 0.3333 caribouMovement pl
    2021-02-19 06:58:43 INFO:: total elpsd: 0.86 secs | 0.4167 caribouMovement p
    2021-02-19 06:58:43 INFO:: total elpsd: 0.92 secs | 0.5 caribouMovement plot
    2021-02-19 06:58:43 INFO:: total elpsd: 0.98 secs | 0.5833 caribouMovement p
    2021-02-19 06:58:43 INFO:: total elpsd: 1 secs | 0.6667 caribouMovement plot
    2021-02-19 06:58:43 INFO:: total elpsd: 1.1 secs | 0.75 caribouMovement plot
    2021-02-19 06:58:43 INFO:: total elpsd: 1.2 secs | 0.8333 caribouMovement pl
    2021-02-19 06:58:43 INFO:: total elpsd: 1.2 secs | 0.9167 caribouMovement pl
    2021-02-19 06:58:43 INFO:: total elpsd: 1.3 secs | 1 caribouMovement move 5
    2021-02-19 06:58:43 INFO:: total elpsd: 1.3 secs | 1 fireSpread burn 5
    2021-02-19 06:58:44 INFO:: total elpsd: 1.7 secs | 1 fireSpread stats 5
    2021-02-19 06:58:44 INFO:: total elpsd: 1.7 secs | 1 caribouMovement plot 10
    2021-02-19 06:58:44 INFO:: total elpsd: 1.8 secs | 1.083 caribouMovement mov
    2021-02-19 06:58:44 INFO:: total elpsd: 1.8 secs | 1.083 caribouMovement plo
    2021-02-19 06:58:44 INFO:: total elpsd: 1.8 secs | 1.167 caribouMovement mov
    2021-02-19 06:58:44 INFO:: total elpsd: 1.8 secs | 1.167 caribouMovement plo
    2021-02-19 06:58:44 INFO:: total elpsd: 1.9 secs | 1.25 caribouMovement move
    2021-02-19 06:58:44 INFO:: total elpsd: 1.9 secs | 1.25 caribouMovement plot
    2021-02-19 06:58:44 INFO:: total elpsd: 2 secs | 1.333 caribouMovement move
    2021-02-19 06:58:44 INFO:: total elpsd: 2 secs | 1.333 caribouMovement plot
    2021-02-19 06:58:44 INFO:: total elpsd: 2 secs | 1.417 caribouMovement move
    2021-02-19 06:58:44 INFO:: total elpsd: 2 secs | 1.417 caribouMovement plot
    2021-02-19 06:58:44 INFO:: total elpsd: 2.1 secs | 1.5 caribouMovement move
    2021-02-19 06:58:44 INFO:: total elpsd: 2.1 secs | 1.5 caribouMovement plot
    2021-02-19 06:58:44 INFO:: total elpsd: 2.2 secs | 1.583 caribouMovement mov
    2021-02-19 06:58:44 INFO:: total elpsd: 2.2 secs | 1.583 caribouMovement plo
    2021-02-19 06:58:44 INFO:: total elpsd: 2.2 secs | 1.667 caribouMovement mov
    2021-02-19 06:58:44 INFO:: total elpsd: 2.3 secs | 1.667 caribouMovement plo
    2021-02-19 06:58:45 INFO:: total elpsd: 2.3 secs | 1.75 caribouMovement move
    2021-02-19 06:58:45 INFO:: total elpsd: 2.3 secs | 1.75 caribouMovement plot
    2021-02-19 06:58:45 INFO:: total elpsd: 2.4 secs | 1.833 caribouMovement mov
    2021-02-19 06:58:45 INFO:: total elpsd: 2.4 secs | 1.833 caribouMovement plo
    2021-02-19 06:58:45 INFO:: total elpsd: 2.4 secs | 1.917 caribouMovement mov
    2021-02-19 06:58:45 INFO:: total elpsd: 2.5 secs | 1.917 caribouMovement plo
    2021-02-19 06:58:45 INFO:: total elpsd: 2.5 secs | 2 fireSpread burn 5
    2021-02-19 06:58:45 INFO:: total elpsd: 2.5 secs | 2 caribouMovement move 5
    2021-02-19 06:58:45 INFO:: total elpsd: 2.5 secs | 2 fireSpread stats 5
    2021-02-19 06:58:45 INFO:: total elpsd: 2.5 secs | 2 caribouMovement plot 10
    simList saved in
     SpaDES.core:::.pkgEnv$.sim
    It will be deleted at next spades() call.
    Quitting from lines 386-390 (ii-modules.Rmd)
    Error: processing vignette 'ii-modules.Rmd' failed with diagnostics:
    invalid 'path' argument
    --- failed re-building ‘ii-modules.Rmd’
    
    --- re-building ‘iii-cache.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Loading required package: sp
    
    Attaching package: 'raster'
    
    The following object is masked from 'package:magrittr':
    
     extract
    
    Loading required package: quickPlot
    
    Attaching package: 'SpaDES.core'
    
    The following objects are masked from 'package:stats':
    
     end, start
    
    The following object is masked from 'package:utils':
    
     citation
    
    Setting:
     options(
     spades.modulePath = '/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/SpaDES.core.Rcheck/SpaDES.core/sampleModules'
     )
    Paths set to:
     options(
     rasterTmpDir = '/Volumes/Temp/tmp/Rtmp5YNCnt/raster'
     reproducible.cachePath = '/Volumes/Temp/tmp/Rtmp5YNCnt/Require/cache'
     spades.inputPath = '/Volumes/Temp/tmp/RtmpcPAYST/SpaDES/inputs'
     spades.outputPath = '/Volumes/Temp/tmp/RtmpcPAYST/SpaDES/outputs'
     spades.modulePath = '/Volumes/Builds/packages/high-sierra-x86_64/results/4.0/SpaDES.core.Rcheck/SpaDES.core/sampleModules'
     )
    Loading required package: RColorBrewer
    Loading required package: SpaDES.tools
    --- finished re-building ‘iii-cache.Rmd’
    
    --- re-building ‘iv-advanced.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘iv-advanced.Rmd’
    
    --- re-building ‘v-automated-testing.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘v-automated-testing.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘ii-modules.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-macos-x86_64

Version: 1.0.6
Check: dependencies in R code
Result: NOTE
    No protocol specified
    No protocol specified
Flavor: r-oldrel-macos-x86_64

Version: 1.0.6
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘i-introduction.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘i-introduction.Rmd’
    
    --- re-building ‘ii-modules.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'magrittr'
    
    The following object is masked from 'package:raster':
    
     extract
    
    Setting:
     options(
     spades.modulePath = '/Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/results/3.6/SpaDES.core.Rcheck/SpaDES.core/sampleModules'
     )
    Paths set to:
     options(
     rasterTmpDir = '/private/tmp/RtmpxgQIeu/raster'
     reproducible.cachePath = '/private/tmp/RtmpxgQIeu/Require/cache'
     spades.inputPath = '/private/tmp/RtmpZJkGmA/SpaDES/inputs'
     spades.outputPath = '/private/tmp/RtmpZJkGmA/SpaDES/outputs'
     spades.modulePath = '/Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/results/3.6/SpaDES.core.Rcheck/SpaDES.core/sampleModules'
     )
    2021-02-21 06:10:51 INFO:: total elpsd: 0.0028 secs | 0 checkpoint init 0
    2021-02-21 06:10:51 INFO:: total elpsd: 0.0087 secs | 0 save init 0
    2021-02-21 06:10:51 INFO:: total elpsd: 0.012 secs | 0 progress init 0
    2021-02-21 06:10:51 INFO:: total elpsd: 0.015 secs | 0 load init 0
    2021-02-21 06:10:51 INFO:: total elpsd: 0.018 secs | 0 randomLandscapes init
    2021-02-21 06:10:52 INFO:: total elpsd: 0.46 secs | 0 fireSpread init 1
    2021-02-21 06:10:52 INFO:: total elpsd: 0.48 secs | 0 caribouMovement init 1
    2021-02-21 06:10:52 INFO:: total elpsd: 0.49 secs | 0 fireSpread burn 5
    2021-02-21 06:10:52 INFO:: total elpsd: 0.6 secs | 0 fireSpread stats 5
    2021-02-21 06:10:52 INFO:: total elpsd: 0.61 secs | 0 randomLandscapes plot
    2021-02-21 06:10:52 INFO:: total elpsd: 0.83 secs | 0 fireSpread plot.init 1
    2021-02-21 06:10:52 INFO:: total elpsd: 1 secs | 0.08333 caribouMovement plo
    2021-02-21 06:10:52 INFO:: total elpsd: 1.1 secs | 0.1667 caribouMovement pl
    2021-02-21 06:10:53 INFO:: total elpsd: 1.3 secs | 0.25 caribouMovement plot
    2021-02-21 06:10:53 INFO:: total elpsd: 1.4 secs | 0.3333 caribouMovement pl
    2021-02-21 06:10:53 INFO:: total elpsd: 1.6 secs | 0.4167 caribouMovement pl
    2021-02-21 06:10:53 INFO:: total elpsd: 1.7 secs | 0.5 caribouMovement plot
    2021-02-21 06:10:53 INFO:: total elpsd: 1.8 secs | 0.5833 caribouMovement pl
    2021-02-21 06:10:53 INFO:: total elpsd: 2 secs | 0.6667 caribouMovement plot
    2021-02-21 06:10:53 INFO:: total elpsd: 2.1 secs | 0.75 caribouMovement plot
    2021-02-21 06:10:54 INFO:: total elpsd: 2.2 secs | 0.8333 caribouMovement pl
    2021-02-21 06:10:54 INFO:: total elpsd: 2.4 secs | 0.9167 caribouMovement pl
    2021-02-21 06:10:54 INFO:: total elpsd: 2.5 secs | 1 caribouMovement move 5
    2021-02-21 06:10:54 INFO:: total elpsd: 2.6 secs | 1 fireSpread burn 5
    2021-02-21 06:10:55 INFO:: total elpsd: 3.4 secs | 1 fireSpread stats 5
    2021-02-21 06:10:55 INFO:: total elpsd: 3.4 secs | 1 caribouMovement plot 10
    2021-02-21 06:10:55 INFO:: total elpsd: 3.5 secs | 1.083 caribouMovement mov
    2021-02-21 06:10:55 INFO:: total elpsd: 3.6 secs | 1.083 caribouMovement plo
    2021-02-21 06:10:55 INFO:: total elpsd: 3.7 secs | 1.167 caribouMovement mov
    2021-02-21 06:10:55 INFO:: total elpsd: 3.7 secs | 1.167 caribouMovement plo
    2021-02-21 06:10:55 INFO:: total elpsd: 3.9 secs | 1.25 caribouMovement move
    2021-02-21 06:10:55 INFO:: total elpsd: 3.9 secs | 1.25 caribouMovement plot
    2021-02-21 06:10:55 INFO:: total elpsd: 4 secs | 1.333 caribouMovement move
    2021-02-21 06:10:55 INFO:: total elpsd: 4 secs | 1.333 caribouMovement plot
    2021-02-21 06:10:56 INFO:: total elpsd: 4.2 secs | 1.417 caribouMovement mov
    2021-02-21 06:10:56 INFO:: total elpsd: 4.2 secs | 1.417 caribouMovement plo
    2021-02-21 06:10:56 INFO:: total elpsd: 4.3 secs | 1.5 caribouMovement move
    2021-02-21 06:10:56 INFO:: total elpsd: 4.3 secs | 1.5 caribouMovement plot
    2021-02-21 06:10:56 INFO:: total elpsd: 4.5 secs | 1.583 caribouMovement mov
    2021-02-21 06:10:56 INFO:: total elpsd: 4.5 secs | 1.583 caribouMovement plo
    2021-02-21 06:10:56 INFO:: total elpsd: 4.6 secs | 1.667 caribouMovement mov
    2021-02-21 06:10:56 INFO:: total elpsd: 4.6 secs | 1.667 caribouMovement plo
    2021-02-21 06:10:56 INFO:: total elpsd: 4.8 secs | 1.75 caribouMovement move
    2021-02-21 06:10:56 INFO:: total elpsd: 4.8 secs | 1.75 caribouMovement plot
    2021-02-21 06:10:56 INFO:: total elpsd: 4.9 secs | 1.833 caribouMovement mov
    2021-02-21 06:10:56 INFO:: total elpsd: 4.9 secs | 1.833 caribouMovement plo
    2021-02-21 06:10:56 INFO:: total elpsd: 5.1 secs | 1.917 caribouMovement mov
    2021-02-21 06:10:56 INFO:: total elpsd: 5.1 secs | 1.917 caribouMovement plo
    2021-02-21 06:10:57 INFO:: total elpsd: 5.2 secs | 2 fireSpread burn 5
    2021-02-21 06:10:57 INFO:: total elpsd: 5.3 secs | 2 caribouMovement move 5
    2021-02-21 06:10:57 INFO:: total elpsd: 5.3 secs | 2 fireSpread stats 5
    2021-02-21 06:10:57 INFO:: total elpsd: 5.3 secs | 2 caribouMovement plot 10
    simList saved in
     SpaDES.core:::.pkgEnv$.sim
    It will be deleted at next spades() call.
    Quitting from lines 389-391 (ii-modules.Rmd)
    Error: processing vignette 'ii-modules.Rmd' failed with diagnostics:
    invalid 'path' argument
    --- failed re-building ‘ii-modules.Rmd’
    
    --- re-building ‘iii-cache.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'raster'
    
    The following object is masked from 'package:magrittr':
    
     extract
    
    Loading required package: quickPlot
    
    Attaching package: 'SpaDES.core'
    
    The following objects are masked from 'package:stats':
    
     end, start
    
    The following object is masked from 'package:utils':
    
     citation
    
    Setting:
     options(
     spades.modulePath = '/Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/results/3.6/SpaDES.core.Rcheck/SpaDES.core/sampleModules'
     )
    Paths set to:
     options(
     rasterTmpDir = '/private/tmp/RtmpT9WZrK/raster'
     reproducible.cachePath = '/private/tmp/RtmpT9WZrK/Require/cache'
     spades.inputPath = '/private/tmp/RtmpZJkGmA/SpaDES/inputs'
     spades.outputPath = '/private/tmp/RtmpZJkGmA/SpaDES/outputs'
     spades.modulePath = '/Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/results/3.6/SpaDES.core.Rcheck/SpaDES.core/sampleModules'
     )
    Loading required package: RColorBrewer
    --- finished re-building ‘iii-cache.Rmd’
    
    --- re-building ‘iv-advanced.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘iv-advanced.Rmd’
    
    --- re-building ‘v-automated-testing.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘v-automated-testing.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘ii-modules.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-oldrel-macos-x86_64