CRAN Package Check Results for Package SpaDES.core

Last updated on 2019-03-18 20:48:44 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.2.4 49.82 390.16 439.98 ERROR
r-devel-linux-x86_64-debian-gcc 0.2.4 39.18 296.96 336.14 ERROR
r-devel-linux-x86_64-fedora-clang 0.2.4 601.14 ERROR
r-devel-linux-x86_64-fedora-gcc 0.2.4 566.94 ERROR
r-devel-windows-ix86+x86_64 0.2.4 108.00 554.00 662.00 ERROR
r-patched-linux-x86_64 0.2.4 33.36 350.71 384.07 ERROR
r-patched-solaris-x86 0.2.4 758.90 ERROR
r-release-linux-x86_64 0.2.4 35.39 354.86 390.25 ERROR
r-release-windows-ix86+x86_64 0.2.4 51.00 378.00 429.00 ERROR
r-release-osx-x86_64 0.2.4 WARN
r-oldrel-windows-ix86+x86_64 0.2.4 85.00 587.00 672.00 ERROR
r-oldrel-osx-x86_64 0.2.4 WARN

Check Details

Version: 0.2.4
Check: examples
Result: ERROR
    Running examples in 'SpaDES.core-Ex.R' failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: moduleVersion
    > ### Title: Parse and extract a module's version
    > ### Aliases: moduleVersion moduleVersion,character,character,missing-method
    > ### moduleVersion,character,missing,missing-method
    > ### moduleVersion,character,missing,simList-method
    >
    > ### ** Examples
    >
    > path <- system.file("sampleModules", package = "SpaDES.core")
    >
    > # using filepath
    > moduleVersion("caribouMovement", path)
    [1] '1.6.0'
    >
    > # using simList
    > mySim <- simInit(
    + times = list(start = 2000.0, end = 2002.0, timeunit = "year"),
    + params = list(
    + .globals = list(stackName = "landscape", burnStats = "nPixelsBurned")
    + ),
    + modules = list("caribouMovement"),
    + paths = list(modulePath = path)
    + )
    Setting:
     options(
     spades.modulePath = '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SpaDES.core/sampleModules'
     )
    Paths set to:
     options(
     reproducible.cachePath = '/tmp/RtmpHiaXh4/reproducible/cache'
     spades.inputPath = '/tmp/RtmpMsCeSh/SpaDES/inputs'
     spades.outputPath = '/tmp/RtmpMsCeSh/SpaDES/outputs'
     spades.modulePath = '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SpaDES.core/sampleModules'
     )
    Warning in gzfile(file, mode) :
     cannot open compressed file '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/.snapshot.RDS', probable reason 'Read-only file system'
    Error in gzfile(file, mode) : cannot open the connection
    Calls: simInit ... Require -> installedVersionsQuick -> saveRDS -> gzfile
    Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.2.4
Check: tests
Result: ERROR
     Running 'test-all.R' [163s/175s]
    Running the tests in 'tests/test-all.R' failed.
    Complete output:
     > library(testthat)
     > test_check("SpaDES.core")
     Loading required package: SpaDES.core
     Loading required package: quickPlot
     Loading required package: reproducible
    
     Attaching package: 'SpaDES.core'
    
     The following objects are masked from 'package:stats':
    
     end, start
    
     The following object is masked from 'package:utils':
    
     citation
    
     Using cached copy of .inputObjects event in test module.
     Error in header[["Content-Length"]] : subscript out of bounds
     -- 1. Failure: simulation runs with simInit and spades (@test-simulation.R#85)
     mySim$npixelsburned not equal to `burnedLast`.
     10/10 mismatches (average diff: 228)
     [1] 1623 - 1725 == -102
     [2] 201 - 126 == 75
     [3] 723 - 816 == -93
     [4] 2036 - 2136 == -100
     [5] 1561 - 1836 == -275
     [6] 739 - 825 == -86
     [7] 1836 - 1381 == 455
     [8] 2024 - 1507 == 517
     [9] 1798 - 1509 == 289
     ...
    
     -- 2. Failure: simulation runs with simInit and spades (@test-simulation.R#86)
     mySim$caribou$x not equivalent to `pos_x`.
     100/100 mismatches (average diff: 35.1)
     [1] 13.1 - 1.06 == 12.0
     [2] -32.9 - 44.45 == -77.3
     [3] 27.4 - 45.88 == -18.5
     [4] 39.0 - -1.32 == 40.3
     [5] -29.7 - 17.86 == -47.6
     [6] 17.6 - 48.48 == -30.9
     [7] -18.1 - 10.75 == -28.9
     [8] 24.5 - -24.63 == 49.2
     [9] -31.7 - -48.51 == 16.8
     ...
    
     -- 3. Failure: simulation runs with simInit and spades (@test-simulation.R#87)
     mySim$caribou$y not equivalent to `pos_y`.
     100/100 mismatches (average diff: 33.6)
     [1] -46.58 - -15.90 == -30.68
     [2] 38.24 - -8.97 == 47.21
     [3] 20.03 - 25.27 == -5.24
     [4] -21.46 - -39.07 == 17.61
     [5] -9.51 - -32.96 == 23.45
     [6] 14.44 - 19.59 == -5.15
     [7] 44.91 - 14.87 == 30.05
     [8] 11.27 - 38.26 == -26.99
     [9] 24.07 - -8.17 == 32.23
     ...
    
     Using cached copy of .inputObjects event in child6 module.
     Using memoised copy of .inputObjects event in child6 module
     Using memoised copy of .inputObjects event in child6 module
     == testthat results ===========================================================
     OK: 457 SKIPPED: 32 FAILED: 3
     1. Failure: simulation runs with simInit and spades (@test-simulation.R#85)
     2. Failure: simulation runs with simInit and spades (@test-simulation.R#86)
     3. Failure: simulation runs with simInit and spades (@test-simulation.R#87)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.2.4
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building 'i-introduction.Rmd' using rmarkdown
    --- finished re-building 'i-introduction.Rmd'
    
    --- re-building 'ii-modules.Rmd' using rmarkdown
    
    Attaching package: 'igraph'
    
    The following objects are masked from 'package:stats':
    
     decompose, spectrum
    
    The following object is masked from 'package:base':
    
     union
    
    Loading required package: quickPlot
    Loading required package: reproducible
    
    Attaching package: 'SpaDES.core'
    
    The following objects are masked from 'package:stats':
    
     end, start
    
    The following object is masked from 'package:utils':
    
     citation
    
    Loading required package: SpaDES.tools
    Loading required package: RandomFields
    Loading required package: sp
    Loading required package: RandomFieldsUtils
    
    Attaching package: 'RandomFields'
    
    The following object is masked from 'package:RandomFieldsUtils':
    
     RFoptions
    
    Setting:
     options(
     spades.modulePath = '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SpaDES.core/sampleModules'
     )
    Paths set to:
     options(
     reproducible.cachePath = '/tmp/RtmpHiaXh4/reproducible/cache'
     spades.inputPath = '/tmp/RtmpMsCeSh/SpaDES/inputs'
     spades.outputPath = '/tmp/RtmpMsCeSh/SpaDES/outputs'
     spades.modulePath = '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SpaDES.core/sampleModules'
     )
    Warning in gzfile(file, mode) :
     cannot open compressed file '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/.snapshot.RDS', probable reason 'Read-only file system'
    Quitting from lines 345-373 (ii-modules.Rmd)
    Error: processing vignette 'ii-modules.Rmd' failed with diagnostics:
    cannot open the connection
    --- failed re-building 'ii-modules.Rmd'
    
    --- re-building 'iii-cache.Rmd' using rmarkdown
    Loading required package: sp
    
    Attaching package: 'raster'
    
    The following object is masked from 'package:magrittr':
    
     extract
    
    Loading required package: quickPlot
    Loading required package: reproducible
    
    Attaching package: 'SpaDES.core'
    
    The following objects are masked from 'package:stats':
    
     end, start
    
    The following object is masked from 'package:utils':
    
     citation
    
    Setting:
     options(
     spades.modulePath = '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SpaDES.core/sampleModules'
     )
    Paths set to:
     options(
     reproducible.cachePath = '/tmp/RtmpHiaXh4/reproducible/cache'
     spades.inputPath = '/tmp/RtmpMsCeSh/SpaDES/inputs'
     spades.outputPath = '/tmp/RtmpMsCeSh/SpaDES/outputs'
     spades.modulePath = '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/SpaDES.core/sampleModules'
     )
    Quitting from lines 48-61 (iii-cache.Rmd)
    Error: processing vignette 'iii-cache.Rmd' failed with diagnostics:
    cannot open the connection
    --- failed re-building 'iii-cache.Rmd'
    
    SUMMARY: processing the following files failed:
     'ii-modules.Rmd' 'iii-cache.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.2.4
Check: examples
Result: ERROR
    Running examples in ‘SpaDES.core-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: moduleVersion
    > ### Title: Parse and extract a module's version
    > ### Aliases: moduleVersion moduleVersion,character,character,missing-method
    > ### moduleVersion,character,missing,missing-method
    > ### moduleVersion,character,missing,simList-method
    >
    > ### ** Examples
    >
    > path <- system.file("sampleModules", package = "SpaDES.core")
    >
    > # using filepath
    > moduleVersion("caribouMovement", path)
    [1] ‘1.6.0’
    >
    > # using simList
    > mySim <- simInit(
    + times = list(start = 2000.0, end = 2002.0, timeunit = "year"),
    + params = list(
    + .globals = list(stackName = "landscape", burnStats = "nPixelsBurned")
    + ),
    + modules = list("caribouMovement"),
    + paths = list(modulePath = path)
    + )
    Setting:
     options(
     spades.modulePath = '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/SpaDES.core/sampleModules'
     )
    Paths set to:
     options(
     reproducible.cachePath = '/home/hornik/tmp/scratch/RtmpWgIvNh/reproducible/cache'
     spades.inputPath = '/home/hornik/tmp/scratch/RtmpMdAk1d/SpaDES/inputs'
     spades.outputPath = '/home/hornik/tmp/scratch/RtmpMdAk1d/SpaDES/outputs'
     spades.modulePath = '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/SpaDES.core/sampleModules'
     )
    Warning in gzfile(file, mode) :
     cannot open compressed file '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/.snapshot.RDS', probable reason 'Read-only file system'
    Error in gzfile(file, mode) : cannot open the connection
    Calls: simInit ... Require -> installedVersionsQuick -> saveRDS -> gzfile
    Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.2.4
Check: tests
Result: ERROR
     Running ‘test-all.R’ [118s/165s]
    Running the tests in ‘tests/test-all.R’ failed.
    Complete output:
     > library(testthat)
     > test_check("SpaDES.core")
     Loading required package: SpaDES.core
     Loading required package: quickPlot
     Loading required package: reproducible
    
     Attaching package: 'SpaDES.core'
    
     The following objects are masked from 'package:stats':
    
     end, start
    
     The following object is masked from 'package:utils':
    
     citation
    
     Using cached copy of .inputObjects event in test module.
     Error in header[["Content-Length"]] : subscript out of bounds
     ── 1. Failure: simulation runs with simInit and spades (@test-simulation.R#85)
     mySim$npixelsburned not equal to `burnedLast`.
     10/10 mismatches (average diff: 228)
     [1] 1623 - 1725 == -102
     [2] 201 - 126 == 75
     [3] 723 - 816 == -93
     [4] 2036 - 2136 == -100
     [5] 1561 - 1836 == -275
     [6] 739 - 825 == -86
     [7] 1836 - 1381 == 455
     [8] 2024 - 1507 == 517
     [9] 1798 - 1509 == 289
     ...
    
     ── 2. Failure: simulation runs with simInit and spades (@test-simulation.R#86)
     mySim$caribou$x not equivalent to `pos_x`.
     100/100 mismatches (average diff: 35.1)
     [1] 13.1 - 1.06 == 12.0
     [2] -32.9 - 44.45 == -77.3
     [3] 27.4 - 45.88 == -18.5
     [4] 39.0 - -1.32 == 40.3
     [5] -29.7 - 17.86 == -47.6
     [6] 17.6 - 48.48 == -30.9
     [7] -18.1 - 10.75 == -28.9
     [8] 24.5 - -24.63 == 49.2
     [9] -31.7 - -48.51 == 16.8
     ...
    
     ── 3. Failure: simulation runs with simInit and spades (@test-simulation.R#87)
     mySim$caribou$y not equivalent to `pos_y`.
     100/100 mismatches (average diff: 33.6)
     [1] -46.58 - -15.90 == -30.68
     [2] 38.24 - -8.97 == 47.21
     [3] 20.03 - 25.27 == -5.24
     [4] -21.46 - -39.07 == 17.61
     [5] -9.51 - -32.96 == 23.45
     [6] 14.44 - 19.59 == -5.15
     [7] 44.91 - 14.87 == 30.05
     [8] 11.27 - 38.26 == -26.99
     [9] 24.07 - -8.17 == 32.23
     ...
    
     Using cached copy of .inputObjects event in child6 module.
     Using memoised copy of .inputObjects event in child6 module
     Using memoised copy of .inputObjects event in child6 module
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 451 SKIPPED: 33 FAILED: 3
     1. Failure: simulation runs with simInit and spades (@test-simulation.R#85)
     2. Failure: simulation runs with simInit and spades (@test-simulation.R#86)
     3. Failure: simulation runs with simInit and spades (@test-simulation.R#87)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.2.4
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘i-introduction.Rmd’ using rmarkdown
    --- finished re-building ‘i-introduction.Rmd’
    
    --- re-building ‘ii-modules.Rmd’ using rmarkdown
    
    Attaching package: 'igraph'
    
    The following objects are masked from 'package:stats':
    
     decompose, spectrum
    
    The following object is masked from 'package:base':
    
     union
    
    Loading required package: quickPlot
    Loading required package: reproducible
    
    Attaching package: 'SpaDES.core'
    
    The following objects are masked from 'package:stats':
    
     end, start
    
    The following object is masked from 'package:utils':
    
     citation
    
    Loading required package: SpaDES.tools
    Loading required package: RandomFields
    Loading required package: sp
    Loading required package: RandomFieldsUtils
    
    Attaching package: 'RandomFields'
    
    The following object is masked from 'package:RandomFieldsUtils':
    
     RFoptions
    
    Setting:
     options(
     spades.modulePath = '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/SpaDES.core/sampleModules'
     )
    Paths set to:
     options(
     reproducible.cachePath = '/home/hornik/tmp/scratch/RtmpWgIvNh/reproducible/cache'
     spades.inputPath = '/home/hornik/tmp/scratch/RtmpMdAk1d/SpaDES/inputs'
     spades.outputPath = '/home/hornik/tmp/scratch/RtmpMdAk1d/SpaDES/outputs'
     spades.modulePath = '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/SpaDES.core/sampleModules'
     )
    Warning in gzfile(file, mode) :
     cannot open compressed file ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/.snapshot.RDS’, probable reason ‘Read-only file system’
    Quitting from lines 345-373 (ii-modules.Rmd)
    Error: processing vignette 'ii-modules.Rmd' failed with diagnostics:
    cannot open the connection
    --- failed re-building ‘ii-modules.Rmd’
    
    --- re-building ‘iii-cache.Rmd’ using rmarkdown
    Loading required package: sp
    
    Attaching package: 'raster'
    
    The following object is masked from 'package:magrittr':
    
     extract
    
    Loading required package: quickPlot
    Loading required package: reproducible
    
    Attaching package: 'SpaDES.core'
    
    The following objects are masked from 'package:stats':
    
     end, start
    
    The following object is masked from 'package:utils':
    
     citation
    
    Setting:
     options(
     spades.modulePath = '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/SpaDES.core/sampleModules'
     )
    Paths set to:
     options(
     reproducible.cachePath = '/home/hornik/tmp/scratch/RtmpWgIvNh/reproducible/cache'
     spades.inputPath = '/home/hornik/tmp/scratch/RtmpMdAk1d/SpaDES/inputs'
     spades.outputPath = '/home/hornik/tmp/scratch/RtmpMdAk1d/SpaDES/outputs'
     spades.modulePath = '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/SpaDES.core/sampleModules'
     )
    Quitting from lines 48-61 (iii-cache.Rmd)
    Error: processing vignette 'iii-cache.Rmd' failed with diagnostics:
    cannot open the connection
    --- failed re-building ‘iii-cache.Rmd’
    
    SUMMARY: processing the following files failed:
     ‘ii-modules.Rmd’ ‘iii-cache.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.2.4
Check: tests
Result: ERROR
     Running ‘test-all.R’ [193s/224s]
    Running the tests in ‘tests/test-all.R’ failed.
    Complete output:
     > library(testthat)
     > test_check("SpaDES.core")
     Loading required package: SpaDES.core
     Loading required package: quickPlot
     Loading required package: reproducible
    
     Attaching package: 'SpaDES.core'
    
     The following objects are masked from 'package:stats':
    
     end, start
    
     The following object is masked from 'package:utils':
    
     citation
    
     OMP: Warning #96: Cannot form a team with 24 threads, using 2 instead.
     OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
     Using cached copy of .inputObjects event in test module.
     ── 1. Failure: simulation runs with simInit and spades (@test-simulation.R#85)
     mySim$npixelsburned not equal to `burnedLast`.
     10/10 mismatches (average diff: 228)
     [1] 1623 - 1725 == -102
     [2] 201 - 126 == 75
     [3] 723 - 816 == -93
     [4] 2036 - 2136 == -100
     [5] 1561 - 1836 == -275
     [6] 739 - 825 == -86
     [7] 1836 - 1381 == 455
     [8] 2024 - 1507 == 517
     [9] 1798 - 1509 == 289
     ...
    
     ── 2. Failure: simulation runs with simInit and spades (@test-simulation.R#86)
     mySim$caribou$x not equivalent to `pos_x`.
     100/100 mismatches (average diff: 35.1)
     [1] 13.1 - 1.06 == 12.0
     [2] -32.9 - 44.45 == -77.3
     [3] 27.4 - 45.88 == -18.5
     [4] 39.0 - -1.32 == 40.3
     [5] -29.7 - 17.86 == -47.6
     [6] 17.6 - 48.48 == -30.9
     [7] -18.1 - 10.75 == -28.9
     [8] 24.5 - -24.63 == 49.2
     [9] -31.7 - -48.51 == 16.8
     ...
    
     ── 3. Failure: simulation runs with simInit and spades (@test-simulation.R#87)
     mySim$caribou$y not equivalent to `pos_y`.
     100/100 mismatches (average diff: 33.6)
     [1] -46.58 - -15.90 == -30.68
     [2] 38.24 - -8.97 == 47.21
     [3] 20.03 - 25.27 == -5.24
     [4] -21.46 - -39.07 == 17.61
     [5] -9.51 - -32.96 == 23.45
     [6] 14.44 - 19.59 == -5.15
     [7] 44.91 - 14.87 == 30.05
     [8] 11.27 - 38.26 == -26.99
     [9] 24.07 - -8.17 == 32.23
     ...
    
     Using cached copy of .inputObjects event in child6 module.
     Using memoised copy of .inputObjects event in child6 module
     Using memoised copy of .inputObjects event in child6 module
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 451 SKIPPED: 33 FAILED: 3
     1. Failure: simulation runs with simInit and spades (@test-simulation.R#85)
     2. Failure: simulation runs with simInit and spades (@test-simulation.R#86)
     3. Failure: simulation runs with simInit and spades (@test-simulation.R#87)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.2.4
Check: tests
Result: ERROR
     Running ‘test-all.R’ [182s/211s]
    Running the tests in ‘tests/test-all.R’ failed.
    Complete output:
     > library(testthat)
     > test_check("SpaDES.core")
     Loading required package: SpaDES.core
     Loading required package: quickPlot
     Loading required package: reproducible
    
     Attaching package: 'SpaDES.core'
    
     The following objects are masked from 'package:stats':
    
     end, start
    
     The following object is masked from 'package:utils':
    
     citation
    
     Using cached copy of .inputObjects event in test module.
     ── 1. Failure: simulation runs with simInit and spades (@test-simulation.R#85)
     mySim$npixelsburned not equal to `burnedLast`.
     10/10 mismatches (average diff: 228)
     [1] 1623 - 1725 == -102
     [2] 201 - 126 == 75
     [3] 723 - 816 == -93
     [4] 2036 - 2136 == -100
     [5] 1561 - 1836 == -275
     [6] 739 - 825 == -86
     [7] 1836 - 1381 == 455
     [8] 2024 - 1507 == 517
     [9] 1798 - 1509 == 289
     ...
    
     ── 2. Failure: simulation runs with simInit and spades (@test-simulation.R#86)
     mySim$caribou$x not equivalent to `pos_x`.
     100/100 mismatches (average diff: 35.1)
     [1] 13.1 - 1.06 == 12.0
     [2] -32.9 - 44.45 == -77.3
     [3] 27.4 - 45.88 == -18.5
     [4] 39.0 - -1.32 == 40.3
     [5] -29.7 - 17.86 == -47.6
     [6] 17.6 - 48.48 == -30.9
     [7] -18.1 - 10.75 == -28.9
     [8] 24.5 - -24.63 == 49.2
     [9] -31.7 - -48.51 == 16.8
     ...
    
     ── 3. Failure: simulation runs with simInit and spades (@test-simulation.R#87)
     mySim$caribou$y not equivalent to `pos_y`.
     100/100 mismatches (average diff: 33.6)
     [1] -46.58 - -15.90 == -30.68
     [2] 38.24 - -8.97 == 47.21
     [3] 20.03 - 25.27 == -5.24
     [4] -21.46 - -39.07 == 17.61
     [5] -9.51 - -32.96 == 23.45
     [6] 14.44 - 19.59 == -5.15
     [7] 44.91 - 14.87 == 30.05
     [8] 11.27 - 38.26 == -26.99
     [9] 24.07 - -8.17 == 32.23
     ...
    
     Using cached copy of .inputObjects event in child6 module.
     Using memoised copy of .inputObjects event in child6 module
     Using memoised copy of .inputObjects event in child6 module
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 451 SKIPPED: 33 FAILED: 3
     1. Failure: simulation runs with simInit and spades (@test-simulation.R#85)
     2. Failure: simulation runs with simInit and spades (@test-simulation.R#86)
     3. Failure: simulation runs with simInit and spades (@test-simulation.R#87)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 0.2.4
Check: tests
Result: ERROR
     Running 'test-all.R' [184s]
    Running the tests in 'tests/test-all.R' failed.
    Complete output:
     > library(testthat)
     > test_check("SpaDES.core")
     Loading required package: SpaDES.core
     Loading required package: quickPlot
     Loading required package: reproducible
    
     Attaching package: 'SpaDES.core'
    
     The following objects are masked from 'package:stats':
    
     end, start
    
     The following object is masked from 'package:utils':
    
     citation
    
     Using cached copy of .inputObjects event in test module.
     -- 1. Failure: simulation runs with simInit and spades (@test-simulation.R#85)
     mySim$npixelsburned not equal to `burnedLast`.
     10/10 mismatches (average diff: 228)
     [1] 1623 - 1725 == -102
     [2] 201 - 126 == 75
     [3] 723 - 816 == -93
     [4] 2036 - 2136 == -100
     [5] 1561 - 1836 == -275
     [6] 739 - 825 == -86
     [7] 1836 - 1381 == 455
     [8] 2024 - 1507 == 517
     [9] 1798 - 1509 == 289
     ...
    
     -- 2. Failure: simulation runs with simInit and spades (@test-simulation.R#86)
     mySim$caribou$x not equivalent to `pos_x`.
     100/100 mismatches (average diff: 35.1)
     [1] 13.1 - 1.06 == 12.0
     [2] -32.9 - 44.45 == -77.3
     [3] 27.4 - 45.88 == -18.5
     [4] 39.0 - -1.32 == 40.3
     [5] -29.7 - 17.86 == -47.6
     [6] 17.6 - 48.48 == -30.9
     [7] -18.1 - 10.75 == -28.9
     [8] 24.5 - -24.63 == 49.2
     [9] -31.7 - -48.51 == 16.8
     ...
    
     -- 3. Failure: simulation runs with simInit and spades (@test-simulation.R#87)
     mySim$caribou$y not equivalent to `pos_y`.
     100/100 mismatches (average diff: 33.6)
     [1] -46.58 - -15.90 == -30.68
     [2] 38.24 - -8.97 == 47.21
     [3] 20.03 - 25.27 == -5.24
     [4] -21.46 - -39.07 == 17.61
     [5] -9.51 - -32.96 == 23.45
     [6] 14.44 - 19.59 == -5.15
     [7] 44.91 - 14.87 == 30.05
     [8] 11.27 - 38.26 == -26.99
     [9] 24.07 - -8.17 == 32.23
     ...
    
     Using cached copy of .inputObjects event in child6 module.
     Using memoised copy of .inputObjects event in child6 module
     Using memoised copy of .inputObjects event in child6 module
     == testthat results ===========================================================
     OK: 456 SKIPPED: 32 FAILED: 3
     1. Failure: simulation runs with simInit and spades (@test-simulation.R#85)
     2. Failure: simulation runs with simInit and spades (@test-simulation.R#86)
     3. Failure: simulation runs with simInit and spades (@test-simulation.R#87)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 0.2.4
Check: examples
Result: ERROR
    Running examples in ‘SpaDES.core-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: moduleVersion
    > ### Title: Parse and extract a module's version
    > ### Aliases: moduleVersion moduleVersion,character,character,missing-method
    > ### moduleVersion,character,missing,missing-method
    > ### moduleVersion,character,missing,simList-method
    >
    > ### ** Examples
    >
    > path <- system.file("sampleModules", package = "SpaDES.core")
    >
    > # using filepath
    > moduleVersion("caribouMovement", path)
    [1] ‘1.6.0’
    >
    > # using simList
    > mySim <- simInit(
    + times = list(start = 2000.0, end = 2002.0, timeunit = "year"),
    + params = list(
    + .globals = list(stackName = "landscape", burnStats = "nPixelsBurned")
    + ),
    + modules = list("caribouMovement"),
    + paths = list(modulePath = path)
    + )
    Setting:
     options(
     spades.modulePath = '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/SpaDES.core/sampleModules'
     )
    Paths set to:
     options(
     reproducible.cachePath = '/tmp/RtmpNpgb5m/reproducible/cache'
     spades.inputPath = '/tmp/RtmpTsBVqt/SpaDES/inputs'
     spades.outputPath = '/tmp/RtmpTsBVqt/SpaDES/outputs'
     spades.modulePath = '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/SpaDES.core/sampleModules'
     )
    Warning in gzfile(file, mode) :
     cannot open compressed file '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/.snapshot.RDS', probable reason 'Read-only file system'
    Error in gzfile(file, mode) : cannot open the connection
    Calls: simInit ... Require -> installedVersionsQuick -> saveRDS -> gzfile
    Execution halted
Flavor: r-patched-linux-x86_64

Version: 0.2.4
Check: tests
Result: ERROR
     Running ‘test-all.R’ [153s/171s]
    Running the tests in ‘tests/test-all.R’ failed.
    Complete output:
     > library(testthat)
     > test_check("SpaDES.core")
     Loading required package: SpaDES.core
     Loading required package: quickPlot
     Loading required package: reproducible
    
     Attaching package: 'SpaDES.core'
    
     The following objects are masked from 'package:stats':
    
     end, start
    
     The following object is masked from 'package:utils':
    
     citation
    
     Using cached copy of .inputObjects event in test module.
     Error in header[["Content-Length"]] : subscript out of bounds
     ── 1. Failure: simulation runs with simInit and spades (@test-simulation.R#86)
     mySim$caribou$x not equivalent to `pos_x`.
     100/100 mismatches (average diff: 9.83)
     [1] 3.67 - 1.06 == 2.613
     [2] 43.57 - 44.45 == -0.883
     [3] 47.23 - 45.88 == 1.351
     [4] 3.60 - -1.32 == 4.918
     [5] 20.23 - 17.86 == 2.370
     [6] -47.81 - 48.48 == -96.294
     [7] 16.55 - 10.75 == 5.796
     [8] -21.41 - -24.63 == 3.218
     [9] -47.28 - -48.51 == 1.234
     ...
    
     ── 2. Failure: simulation runs with simInit and spades (@test-simulation.R#87)
     mySim$caribou$y not equivalent to `pos_y`.
     100/100 mismatches (average diff: 5.15)
     [1] -15.00 - -15.90 == 0.898
     [2] -5.35 - -8.97 == 3.616
     [3] 19.51 - 25.27 == -5.758
     [4] -36.40 - -39.07 == 2.674
     [5] -33.64 - -32.96 == -0.678
     [6] 15.57 - 19.59 == -4.027
     [7] 15.12 - 14.87 == 0.249
     [8] 39.63 - 38.26 == 1.368
     [9] -6.33 - -8.17 == 1.831
     ...
    
     Using cached copy of .inputObjects event in child6 module.
     Using memoised copy of .inputObjects event in child6 module
     Using memoised copy of .inputObjects event in child6 module
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 458 SKIPPED: 32 FAILED: 2
     1. Failure: simulation runs with simInit and spades (@test-simulation.R#86)
     2. Failure: simulation runs with simInit and spades (@test-simulation.R#87)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-linux-x86_64

Version: 0.2.4
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    
    Attaching package: 'igraph'
    
    The following objects are masked from 'package:stats':
    
     decompose, spectrum
    
    The following object is masked from 'package:base':
    
     union
    
    Loading required package: quickPlot
    Loading required package: reproducible
    
    Attaching package: 'SpaDES.core'
    
    The following objects are masked from 'package:stats':
    
     end, start
    
    The following object is masked from 'package:utils':
    
     citation
    
    Loading required package: SpaDES.tools
    Loading required package: RandomFields
    Loading required package: sp
    Loading required package: RandomFieldsUtils
    
    Attaching package: 'RandomFields'
    
    The following object is masked from 'package:RandomFieldsUtils':
    
     RFoptions
    
    Setting:
     options(
     spades.modulePath = '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/SpaDES.core/sampleModules'
     )
    Paths set to:
     options(
     reproducible.cachePath = '/tmp/RtmpNpgb5m/reproducible/cache'
     spades.inputPath = '/tmp/RtmpTsBVqt/SpaDES/inputs'
     spades.outputPath = '/tmp/RtmpTsBVqt/SpaDES/outputs'
     spades.modulePath = '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/SpaDES.core/sampleModules'
     )
    Warning in gzfile(file, mode) :
     cannot open compressed file ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/.snapshot.RDS’, probable reason ‘Read-only file system’
    Quitting from lines 345-373 (ii-modules.Rmd)
    Error: processing vignette ‘ii-modules.Rmd’ failed with diagnostics:
    cannot open the connection
    Execution halted
Flavor: r-patched-linux-x86_64

Version: 0.2.4
Check: tests
Result: ERROR
     Running ‘test-all.R’ [316s/504s]
    Running the tests in ‘tests/test-all.R’ failed.
    Complete output:
     > library(testthat)
     > test_check("SpaDES.core")
     Loading required package: SpaDES.core
     Loading required package: quickPlot
     Loading required package: reproducible
    
     Attaching package: 'SpaDES.core'
    
     The following objects are masked from 'package:stats':
    
     end, start
    
     The following object is masked from 'package:utils':
    
     citation
    
     Using cached copy of .inputObjects event in test module.
     ── 1. Failure: simulation runs with simInit and spades (@test-simulation.R#86)
     mySim$caribou$x not equivalent to `pos_x`.
     100/100 mismatches (average diff: 9.83)
     [1] 3.67 - 1.06 == 2.613
     [2] 43.57 - 44.45 == -0.883
     [3] 47.23 - 45.88 == 1.351
     [4] 3.60 - -1.32 == 4.918
     [5] 20.23 - 17.86 == 2.370
     [6] -47.81 - 48.48 == -96.294
     [7] 16.55 - 10.75 == 5.796
     [8] -21.41 - -24.63 == 3.218
     [9] -47.28 - -48.51 == 1.234
     ...
    
     ── 2. Failure: simulation runs with simInit and spades (@test-simulation.R#87)
     mySim$caribou$y not equivalent to `pos_y`.
     100/100 mismatches (average diff: 5.15)
     [1] -15.00 - -15.90 == 0.898
     [2] -5.35 - -8.97 == 3.616
     [3] 19.51 - 25.27 == -5.758
     [4] -36.40 - -39.07 == 2.674
     [5] -33.64 - -32.96 == -0.678
     [6] 15.57 - 19.59 == -4.027
     [7] 15.12 - 14.87 == 0.249
     [8] 39.63 - 38.26 == 1.368
     [9] -6.33 - -8.17 == 1.831
     ...
    
     Using cached copy of .inputObjects event in child6 module.
     Using memoised copy of .inputObjects event in child6 module
     Using memoised copy of .inputObjects event in child6 module
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 458 SKIPPED: 32 FAILED: 2
     1. Failure: simulation runs with simInit and spades (@test-simulation.R#86)
     2. Failure: simulation runs with simInit and spades (@test-simulation.R#87)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-solaris-x86

Version: 0.2.4
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'igraph'
    
    The following objects are masked from 'package:stats':
    
     decompose, spectrum
    
    The following object is masked from 'package:base':
    
     union
    
    Loading required package: quickPlot
    Loading required package: reproducible
    
    Attaching package: 'SpaDES.core'
    
    The following objects are masked from 'package:stats':
    
     end, start
    
    The following object is masked from 'package:utils':
    
     citation
    
    Loading required package: SpaDES.tools
    Loading required package: RandomFields
    Loading required package: sp
    Loading required package: RandomFieldsUtils
    
    Attaching package: 'RandomFields'
    
    The following object is masked from 'package:RandomFieldsUtils':
    
     RFoptions
    
    Setting:
     options(
     spades.modulePath = '/home/ripley/R/Lib32/SpaDES.core/sampleModules'
     )
    Paths set to:
     options(
     reproducible.cachePath = '/tmp/RtmpJ9aGLC/reproducible/cache'
     spades.inputPath = '/tmp/RtmpUPaGfl/SpaDES/inputs'
     spades.outputPath = '/tmp/RtmpUPaGfl/SpaDES/outputs'
     spades.modulePath = '/home/ripley/R/Lib32/SpaDES.core/sampleModules'
     )
    Quitting from lines 376-382 (ii-modules.Rmd)
    Error: processing vignette 'ii-modules.Rmd' failed with diagnostics:
    there is no package called 'webshot'
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.2.4
Check: examples
Result: ERROR
    Running examples in ‘SpaDES.core-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: moduleVersion
    > ### Title: Parse and extract a module's version
    > ### Aliases: moduleVersion moduleVersion,character,character,missing-method
    > ### moduleVersion,character,missing,missing-method
    > ### moduleVersion,character,missing,simList-method
    >
    > ### ** Examples
    >
    > path <- system.file("sampleModules", package = "SpaDES.core")
    >
    > # using filepath
    > moduleVersion("caribouMovement", path)
    [1] ‘1.6.0’
    >
    > # using simList
    > mySim <- simInit(
    + times = list(start = 2000.0, end = 2002.0, timeunit = "year"),
    + params = list(
    + .globals = list(stackName = "landscape", burnStats = "nPixelsBurned")
    + ),
    + modules = list("caribouMovement"),
    + paths = list(modulePath = path)
    + )
    Setting:
     options(
     spades.modulePath = '/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/SpaDES.core/sampleModules'
     )
    Paths set to:
     options(
     reproducible.cachePath = '/tmp/RtmpMSLnS1/reproducible/cache'
     spades.inputPath = '/tmp/Rtmp9uwtUU/SpaDES/inputs'
     spades.outputPath = '/tmp/Rtmp9uwtUU/SpaDES/outputs'
     spades.modulePath = '/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/SpaDES.core/sampleModules'
     )
    Warning in gzfile(file, mode) :
     cannot open compressed file '/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/.snapshot.RDS', probable reason 'Read-only file system'
    Error in gzfile(file, mode) : cannot open the connection
    Calls: simInit ... Require -> installedVersionsQuick -> saveRDS -> gzfile
    Execution halted
Flavor: r-release-linux-x86_64

Version: 0.2.4
Check: tests
Result: ERROR
     Running ‘test-all.R’ [156s/171s]
    Running the tests in ‘tests/test-all.R’ failed.
    Complete output:
     > library(testthat)
     > test_check("SpaDES.core")
     Loading required package: SpaDES.core
     Loading required package: quickPlot
     Loading required package: reproducible
    
     Attaching package: 'SpaDES.core'
    
     The following objects are masked from 'package:stats':
    
     end, start
    
     The following object is masked from 'package:utils':
    
     citation
    
     Using cached copy of .inputObjects event in test module.
     Error in header[["Content-Length"]] : subscript out of bounds
     ── 1. Failure: simulation runs with simInit and spades (@test-simulation.R#86)
     mySim$caribou$x not equivalent to `pos_x`.
     100/100 mismatches (average diff: 9.83)
     [1] 3.67 - 1.06 == 2.613
     [2] 43.57 - 44.45 == -0.883
     [3] 47.23 - 45.88 == 1.351
     [4] 3.60 - -1.32 == 4.918
     [5] 20.23 - 17.86 == 2.370
     [6] -47.81 - 48.48 == -96.294
     [7] 16.55 - 10.75 == 5.796
     [8] -21.41 - -24.63 == 3.218
     [9] -47.28 - -48.51 == 1.234
     ...
    
     ── 2. Failure: simulation runs with simInit and spades (@test-simulation.R#87)
     mySim$caribou$y not equivalent to `pos_y`.
     100/100 mismatches (average diff: 5.15)
     [1] -15.00 - -15.90 == 0.898
     [2] -5.35 - -8.97 == 3.616
     [3] 19.51 - 25.27 == -5.758
     [4] -36.40 - -39.07 == 2.674
     [5] -33.64 - -32.96 == -0.678
     [6] 15.57 - 19.59 == -4.027
     [7] 15.12 - 14.87 == 0.249
     [8] 39.63 - 38.26 == 1.368
     [9] -6.33 - -8.17 == 1.831
     ...
    
     Using cached copy of .inputObjects event in child6 module.
     Using memoised copy of .inputObjects event in child6 module
     Using memoised copy of .inputObjects event in child6 module
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 458 SKIPPED: 32 FAILED: 2
     1. Failure: simulation runs with simInit and spades (@test-simulation.R#86)
     2. Failure: simulation runs with simInit and spades (@test-simulation.R#87)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-release-linux-x86_64

Version: 0.2.4
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    
    Attaching package: 'igraph'
    
    The following objects are masked from 'package:stats':
    
     decompose, spectrum
    
    The following object is masked from 'package:base':
    
     union
    
    Loading required package: quickPlot
    Loading required package: reproducible
    
    Attaching package: 'SpaDES.core'
    
    The following objects are masked from 'package:stats':
    
     end, start
    
    The following object is masked from 'package:utils':
    
     citation
    
    Loading required package: SpaDES.tools
    Loading required package: RandomFields
    Loading required package: sp
    Loading required package: RandomFieldsUtils
    
    Attaching package: 'RandomFields'
    
    The following object is masked from 'package:RandomFieldsUtils':
    
     RFoptions
    
    Setting:
     options(
     spades.modulePath = '/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/SpaDES.core/sampleModules'
     )
    Paths set to:
     options(
     reproducible.cachePath = '/tmp/RtmpMSLnS1/reproducible/cache'
     spades.inputPath = '/tmp/Rtmp9uwtUU/SpaDES/inputs'
     spades.outputPath = '/tmp/Rtmp9uwtUU/SpaDES/outputs'
     spades.modulePath = '/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/SpaDES.core/sampleModules'
     )
    Warning in gzfile(file, mode) :
     cannot open compressed file ‘/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/.snapshot.RDS’, probable reason ‘Read-only file system’
    Quitting from lines 345-373 (ii-modules.Rmd)
    Error: processing vignette ‘ii-modules.Rmd’ failed with diagnostics:
    cannot open the connection
    Execution halted
Flavor: r-release-linux-x86_64

Version: 0.2.4
Check: tests
Result: ERROR
     Running 'test-all.R' [147s]
    Running the tests in 'tests/test-all.R' failed.
    Complete output:
     > library(testthat)
     > test_check("SpaDES.core")
     Loading required package: SpaDES.core
     Loading required package: quickPlot
     Loading required package: reproducible
    
     Attaching package: 'SpaDES.core'
    
     The following objects are masked from 'package:stats':
    
     end, start
    
     The following object is masked from 'package:utils':
    
     citation
    
     Using cached copy of .inputObjects event in test module.
     -- 1. Failure: simulation runs with simInit and spades (@test-simulation.R#86)
     mySim$caribou$x not equivalent to `pos_x`.
     100/100 mismatches (average diff: 9.83)
     [1] 3.67 - 1.06 == 2.613
     [2] 43.57 - 44.45 == -0.883
     [3] 47.23 - 45.88 == 1.351
     [4] 3.60 - -1.32 == 4.918
     [5] 20.23 - 17.86 == 2.370
     [6] -47.81 - 48.48 == -96.294
     [7] 16.55 - 10.75 == 5.796
     [8] -21.41 - -24.63 == 3.218
     [9] -47.28 - -48.51 == 1.234
     ...
    
     -- 2. Failure: simulation runs with simInit and spades (@test-simulation.R#87)
     mySim$caribou$y not equivalent to `pos_y`.
     100/100 mismatches (average diff: 5.15)
     [1] -15.00 - -15.90 == 0.898
     [2] -5.35 - -8.97 == 3.616
     [3] 19.51 - 25.27 == -5.758
     [4] -36.40 - -39.07 == 2.674
     [5] -33.64 - -32.96 == -0.678
     [6] 15.57 - 19.59 == -4.027
     [7] 15.12 - 14.87 == 0.249
     [8] 39.63 - 38.26 == 1.368
     [9] -6.33 - -8.17 == 1.831
     ...
    
     Using cached copy of .inputObjects event in child6 module.
     Using memoised copy of .inputObjects event in child6 module
     Using memoised copy of .inputObjects event in child6 module
     == testthat results ===========================================================
     OK: 457 SKIPPED: 32 FAILED: 2
     1. Failure: simulation runs with simInit and spades (@test-simulation.R#86)
     2. Failure: simulation runs with simInit and spades (@test-simulation.R#87)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-release-windows-ix86+x86_64

Version: 0.2.4
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    The following object is masked from 'package:RandomFieldsUtils':
    
     RFoptions
    
    The following objects are masked from 'package:base':
    
     abs, acosh, asin, asinh, atan, atan2, atanh, cos, cosh, exp,
     expm1, floor, gamma, lgamma, log, log1p, log2, logb, max, min,
     round, sin, sinh, sqrt, tan, tanh, trunc
    
    Setting:
     options(
     spades.modulePath = '/Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/results/3.5/SpaDES.core.Rcheck/SpaDES.core/sampleModules'
     )
    Paths set to:
     options(
     reproducible.cachePath = '/private/tmp/RtmpblkGAL/reproducible/cache'
     spades.inputPath = '/private/tmp/RtmpP9tEJ9/SpaDES/inputs'
     spades.outputPath = '/private/tmp/RtmpP9tEJ9/SpaDES/outputs'
     spades.modulePath = '/Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/results/3.5/SpaDES.core.Rcheck/SpaDES.core/sampleModules'
     )
    Quitting from lines 376-382 (ii-modules.Rmd)
    Error: processing vignette 'ii-modules.Rmd' failed with diagnostics:
    cannot open the connection
    Execution halted
Flavor: r-release-osx-x86_64

Version: 0.2.4
Check: tests
Result: ERROR
     Running 'test-all.R' [201s]
    Running the tests in 'tests/test-all.R' failed.
    Complete output:
     > library(testthat)
     > test_check("SpaDES.core")
     Loading required package: SpaDES.core
     Loading required package: quickPlot
     Loading required package: reproducible
    
     Attaching package: 'SpaDES.core'
    
     The following objects are masked from 'package:stats':
    
     end, start
    
     The following object is masked from 'package:utils':
    
     citation
    
     Using cached copy of .inputObjects event in test module.
     -- 1. Failure: simulation runs with simInit and spades (@test-simulation.R#86)
     mySim$caribou$x not equivalent to `pos_x`.
     100/100 mismatches (average diff: 9.83)
     [1] 3.67 - 1.06 == 2.613
     [2] 43.57 - 44.45 == -0.883
     [3] 47.23 - 45.88 == 1.351
     [4] 3.60 - -1.32 == 4.918
     [5] 20.23 - 17.86 == 2.370
     [6] -47.81 - 48.48 == -96.294
     [7] 16.55 - 10.75 == 5.796
     [8] -21.41 - -24.63 == 3.218
     [9] -47.28 - -48.51 == 1.234
     ...
    
     -- 2. Failure: simulation runs with simInit and spades (@test-simulation.R#87)
     mySim$caribou$y not equivalent to `pos_y`.
     100/100 mismatches (average diff: 5.15)
     [1] -15.00 - -15.90 == 0.898
     [2] -5.35 - -8.97 == 3.616
     [3] 19.51 - 25.27 == -5.758
     [4] -36.40 - -39.07 == 2.674
     [5] -33.64 - -32.96 == -0.678
     [6] 15.57 - 19.59 == -4.027
     [7] 15.12 - 14.87 == 0.249
     [8] 39.63 - 38.26 == 1.368
     [9] -6.33 - -8.17 == 1.831
     ...
    
     Using cached copy of .inputObjects event in child6 module.
     Using memoised copy of .inputObjects event in child6 module
     Using memoised copy of .inputObjects event in child6 module
     == testthat results ===========================================================
     OK: 458 SKIPPED: 32 FAILED: 2
     1. Failure: simulation runs with simInit and spades (@test-simulation.R#86)
     2. Failure: simulation runs with simInit and spades (@test-simulation.R#87)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-oldrel-windows-ix86+x86_64

Version: 0.2.4
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    The following object is masked from 'package:RandomFieldsUtils':
    
     RFoptions
    
    The following objects are masked from 'package:base':
    
     abs, acosh, asin, asinh, atan, atan2, atanh, cos, cosh, exp,
     expm1, floor, gamma, lgamma, log, log1p, log2, logb, max, min,
     round, sin, sinh, sqrt, tan, tanh, trunc
    
    Setting:
     options(
     spades.modulePath = '/Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/results/3.4/SpaDES.core.Rcheck/SpaDES.core/sampleModules'
     )
    Paths set to:
     options(
     reproducible.cachePath = '/private/tmp/RtmpAQt4Kz/reproducible/cache'
     spades.inputPath = '/private/tmp/RtmpFl5Sri/SpaDES/inputs'
     spades.outputPath = '/private/tmp/RtmpFl5Sri/SpaDES/outputs'
     spades.modulePath = '/Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/results/3.4/SpaDES.core.Rcheck/SpaDES.core/sampleModules'
     )
    Quitting from lines 376-382 (ii-modules.Rmd)
    Error: processing vignette 'ii-modules.Rmd' failed with diagnostics:
    cannot open the connection
    Execution halted
Flavor: r-oldrel-osx-x86_64