CRAN Package Check Results for Package SpaDES.core

Last updated on 2018-11-18 17:50:05 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.2.2 36.09 367.58 403.67 WARN
r-devel-linux-x86_64-debian-gcc 0.2.2 28.86 276.81 305.67 ERROR
r-devel-linux-x86_64-fedora-clang 0.2.3 240.14 OK
r-devel-linux-x86_64-fedora-gcc 0.2.3 241.44 OK
r-devel-windows-ix86+x86_64 0.2.2 80.00 473.00 553.00 ERROR
r-patched-linux-x86_64 0.2.2 24.70 347.39 372.09 ERROR
r-patched-solaris-x86 0.2.3 603.60 WARN
r-release-linux-x86_64 0.2.2 31.29 344.10 375.39 ERROR
r-release-windows-ix86+x86_64 0.2.2 66.00 487.00 553.00 WARN
r-release-osx-x86_64 0.2.2 ERROR
r-oldrel-windows-ix86+x86_64 0.2.2 57.00 383.00 440.00 ERROR
r-oldrel-osx-x86_64 0.2.2 ERROR

Check Details

Version: 0.2.2
Check: Rd cross-references
Result: WARN
    Missing link or links in documentation object 'moduleCoverage.Rd':
     ‘[covr]{shine}’
    
    See section 'Cross-references' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.2.2
Check: for code/documentation mismatches
Result: WARN
    Codoc mismatches from documentation object '.robustDigest,simList-method':
    \S4method{.robustDigest}{simList}
     Code: function(object, objects, length =
     getOption("reproducible.length", Inf), algo =
     "xxhash64", quick = getOption("reproducible.quick",
     FALSE), classOptions = list())
     Docs: function(object, objects, length = 1e+06, algo = "xxhash64",
     quick = getOption("reproducible.quick", FALSE),
     classOptions = list())
     Mismatches in argument default values:
     Name: 'length' Code: getOption("reproducible.length", Inf) Docs: 1e+06
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.2.2
Check: tests
Result: ERROR
     Running ‘test-all.R’ [102s/145s]
    Running the tests in ‘tests/test-all.R’ failed.
    Complete output:
     > library(testthat)
     > test_check("SpaDES.core")
     Loading required package: SpaDES.core
     Loading required package: quickPlot
     Loading required package: reproducible
    
     Attaching package: 'reproducible'
    
     The following object is masked from 'package:testthat':
    
     %>%
    
    
     Attaching package: 'SpaDES.core'
    
     The following objects are masked from 'package:stats':
    
     end, start
    
     Using cached copy of .inputObjects event in test module. Adding to memoised copy.
     Using cached copy of .inputObjects event in test module. Adding to memoised copy.
     Using memoised copy of .inputObjects event in test module
     Using cached copy of .inputObjects event in test module. Adding to memoised copy.
     ── 1. Failure: test objSize (@test-cache.R#333) ───────────────────────────────
     length(os) == 4 isn't true.
    
     Using cached copy of .inputObjects event in child6 module. Adding to memoised copy.
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 310 SKIPPED: 35 FAILED: 1
     1. Failure: test objSize (@test-cache.R#333)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.2.2
Check: tests
Result: ERROR
     Running 'test-all.R' [179s]
    Running the tests in 'tests/test-all.R' failed.
    Complete output:
     > library(testthat)
     > test_check("SpaDES.core")
     Loading required package: SpaDES.core
     Loading required package: quickPlot
     Loading required package: reproducible
    
     Attaching package: 'reproducible'
    
     The following object is masked from 'package:testthat':
    
     %>%
    
    
     Attaching package: 'SpaDES.core'
    
     The following objects are masked from 'package:stats':
    
     end, start
    
     Using cached copy of .inputObjects event in test module. Adding to memoised copy.
     Using cached copy of .inputObjects event in test module. Adding to memoised copy.
     Using memoised copy of .inputObjects event in test module
     Using cached copy of .inputObjects event in test module. Adding to memoised copy.
     -- 1. Failure: test objSize (@test-cache.R#333) -------------------------------
     length(os) == 4 isn't true.
    
     Using cached copy of .inputObjects event in child6 module. Adding to memoised copy.
     == testthat results ===========================================================
     OK: 310 SKIPPED: 35 FAILED: 1
     1. Failure: test objSize (@test-cache.R#333)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 0.2.2
Check: tests
Result: ERROR
     Running ‘test-all.R’ [136s/149s]
    Running the tests in ‘tests/test-all.R’ failed.
    Complete output:
     > library(testthat)
     > test_check("SpaDES.core")
     Loading required package: SpaDES.core
     Loading required package: quickPlot
     Loading required package: reproducible
    
     Attaching package: 'reproducible'
    
     The following object is masked from 'package:testthat':
    
     %>%
    
    
     Attaching package: 'SpaDES.core'
    
     The following objects are masked from 'package:stats':
    
     end, start
    
     Using cached copy of .inputObjects event in test module. Adding to memoised copy.
     Using cached copy of .inputObjects event in test module. Adding to memoised copy.
     Using memoised copy of .inputObjects event in test module
     Using cached copy of .inputObjects event in test module. Adding to memoised copy.
     ── 1. Failure: test objSize (@test-cache.R#333) ───────────────────────────────
     length(os) == 4 isn't true.
    
     Using cached copy of .inputObjects event in child6 module. Adding to memoised copy.
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 310 SKIPPED: 35 FAILED: 1
     1. Failure: test objSize (@test-cache.R#333)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-linux-x86_64

Version: 0.2.3
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'igraph'
    
    The following objects are masked from 'package:stats':
    
     decompose, spectrum
    
    The following object is masked from 'package:base':
    
     union
    
    Loading required package: quickPlot
    Loading required package: reproducible
    
    Attaching package: 'reproducible'
    
    The following object is masked from 'package:igraph':
    
     %>%
    
    
    Attaching package: 'SpaDES.core'
    
    The following objects are masked from 'package:stats':
    
     end, start
    
    The following object is masked from 'package:utils':
    
     citation
    
    Loading required package: SpaDES.tools
    Loading required package: RandomFields
    Loading required package: sp
    Loading required package: RandomFieldsUtils
    
    Attaching package: 'RandomFields'
    
    The following object is masked from 'package:RandomFieldsUtils':
    
     RFoptions
    
    The following objects are masked from 'package:base':
    
     abs, acosh, asin, asinh, atan, atan2, atanh, cos, cosh, exp,
     expm1, floor, gamma, lgamma, log, log1p, log2, logb, max, min,
     round, sin, sinh, sqrt, tan, tanh, trunc
    
    Quitting from lines 377-383 (ii-modules.Rmd)
    Error: processing vignette 'ii-modules.Rmd' failed with diagnostics:
    there is no package called 'webshot'
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.2.2
Check: tests
Result: ERROR
     Running ‘test-all.R’ [133s/148s]
    Running the tests in ‘tests/test-all.R’ failed.
    Complete output:
     > library(testthat)
     > test_check("SpaDES.core")
     Loading required package: SpaDES.core
     Loading required package: quickPlot
     Loading required package: reproducible
    
     Attaching package: 'reproducible'
    
     The following object is masked from 'package:testthat':
    
     %>%
    
    
     Attaching package: 'SpaDES.core'
    
     The following objects are masked from 'package:stats':
    
     end, start
    
     Using cached copy of .inputObjects event in test module. Adding to memoised copy.
     Using cached copy of .inputObjects event in test module. Adding to memoised copy.
     Using memoised copy of .inputObjects event in test module
     Using cached copy of .inputObjects event in test module. Adding to memoised copy.
     ── 1. Failure: test objSize (@test-cache.R#333) ───────────────────────────────
     length(os) == 4 isn't true.
    
     Using cached copy of .inputObjects event in child6 module. Adding to memoised copy.
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 310 SKIPPED: 35 FAILED: 1
     1. Failure: test objSize (@test-cache.R#333)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-release-linux-x86_64

Version: 0.2.2
Check: tests
Result: ERROR
     Running ‘test-all.R’ [141s/216s]
    Running the tests in ‘tests/test-all.R’ failed.
    Last 13 lines of output:
    
     ── 2. Error: 3 levels of parent and child modules load and show correctly (@test
     At optimal_modularity.c:85 : GLPK is not available, Unimplemented function call
     1: moduleGraph(mySim, FALSE) at testthat/test-module-deps-methods.R:195
     2: moduleGraph(mySim, FALSE)
     3: cluster_optimal(grph)
    
     Using cached copy of .inputObjects event in child6 module. Adding to memoised copy.
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 304 SKIPPED: 35 FAILED: 2
     1. Failure: test objSize (@test-cache.R#333)
     2. Error: 3 levels of parent and child modules load and show correctly (@test-module-deps-methods.R#195)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-release-osx-x86_64

Version: 0.2.2
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    The following object is masked from 'package:base':
    
     union
    
    Loading required package: quickPlot
    Loading required package: reproducible
    
    Attaching package: 'reproducible'
    
    The following object is masked from 'package:igraph':
    
     %>%
    
    
    Attaching package: 'SpaDES.core'
    
    The following objects are masked from 'package:stats':
    
     end, start
    
    Loading required package: SpaDES.tools
    Quitting from lines 366-372 (ii-modules.Rmd)
    Error: processing vignette 'ii-modules.Rmd' failed with diagnostics:
    cannot open the connection
    Execution halted
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 0.2.2
Check: tests
Result: ERROR
     Running 'test-all.R' [140s]
    Running the tests in 'tests/test-all.R' failed.
    Complete output:
     > library(testthat)
     > test_check("SpaDES.core")
     Loading required package: SpaDES.core
     Loading required package: quickPlot
     Loading required package: reproducible
    
     Attaching package: 'reproducible'
    
     The following object is masked from 'package:testthat':
    
     %>%
    
    
     Attaching package: 'SpaDES.core'
    
     The following objects are masked from 'package:stats':
    
     end, start
    
     Using cached copy of .inputObjects event in test module. Adding to memoised copy.
     Using cached copy of .inputObjects event in test module. Adding to memoised copy.
     Using memoised copy of .inputObjects event in test module
     Using cached copy of .inputObjects event in test module. Adding to memoised copy.
     -- 1. Failure: test objSize (@test-cache.R#333) -------------------------------
     length(os) == 4 isn't true.
    
     Using cached copy of .inputObjects event in child6 module. Adding to memoised copy.
     == testthat results ===========================================================
     OK: 310 SKIPPED: 35 FAILED: 1
     1. Failure: test objSize (@test-cache.R#333)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-oldrel-windows-ix86+x86_64

Version: 0.2.2
Check: tests
Result: ERROR
     Running ‘test-all.R’ [151s/225s]
    Running the tests in ‘tests/test-all.R’ failed.
    Last 13 lines of output:
    
     ── 2. Error: 3 levels of parent and child modules load and show correctly (@test
     At optimal_modularity.c:85 : GLPK is not available, Unimplemented function call
     1: moduleGraph(mySim, FALSE) at testthat/test-module-deps-methods.R:195
     2: moduleGraph(mySim, FALSE)
     3: cluster_optimal(grph)
    
     Using cached copy of .inputObjects event in child6 module. Adding to memoised copy.
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 304 SKIPPED: 35 FAILED: 2
     1. Failure: test objSize (@test-cache.R#333)
     2. Error: 3 levels of parent and child modules load and show correctly (@test-module-deps-methods.R#195)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-oldrel-osx-x86_64