CRAN Package Check Results for Package SpaDES.core

Last updated on 2019-01-21 10:47:01 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.2.3 41.74 385.73 427.47 WARN
r-devel-linux-x86_64-debian-gcc 0.2.3 32.09 294.60 326.69 WARN
r-devel-linux-x86_64-fedora-clang 0.2.3 496.56 WARN
r-devel-linux-x86_64-fedora-gcc 0.2.3 476.03 WARN
r-devel-windows-ix86+x86_64 0.2.3 79.00 503.00 582.00 WARN
r-patched-linux-x86_64 0.2.3 35.03 351.53 386.56 WARN
r-patched-solaris-x86 0.2.3 731.90 WARN
r-release-linux-x86_64 0.2.3 35.58 349.66 385.24 WARN
r-release-windows-ix86+x86_64 0.2.3 69.00 500.00 569.00 WARN
r-release-osx-x86_64 0.2.3 ERROR
r-oldrel-windows-ix86+x86_64 0.2.3 76.00 547.00 623.00 WARN
r-oldrel-osx-x86_64 0.2.3 ERROR

Check Details

Version: 0.2.3
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘i-introduction.Rmd’ using rmarkdown
    --- finished re-building ‘i-introduction.Rmd’
    
    --- re-building ‘ii-modules.Rmd’ using rmarkdown
    
    Attaching package: 'igraph'
    
    The following objects are masked from 'package:stats':
    
     decompose, spectrum
    
    The following object is masked from 'package:base':
    
     union
    
    Loading required package: quickPlot
    Loading required package: reproducible
    
    Attaching package: 'reproducible'
    
    The following object is masked from 'package:igraph':
    
     %>%
    
    
    Attaching package: 'SpaDES.core'
    
    The following objects are masked from 'package:stats':
    
     end, start
    
    The following object is masked from 'package:utils':
    
     citation
    
    Loading required package: SpaDES.tools
    Loading required package: RandomFields
    Loading required package: sp
    Loading required package: RandomFieldsUtils
    
    Attaching package: 'RandomFields'
    
    The following object is masked from 'package:RandomFieldsUtils':
    
     RFoptions
    
    The following objects are masked from 'package:base':
    
     abs, acosh, asin, asinh, atan, atan2, atanh, cos, cosh, exp,
     expm1, floor, gamma, lgamma, log, log1p, log2, logb, max, min,
     round, sin, sinh, sqrt, tan, tanh, trunc
    
    
    Attaching package: 'data.table'
    
    The following object is masked from 'package:raster':
    
     shift
    
    Quitting from lines 637-677 (ii-modules.Rmd)
    Error: processing vignette 'ii-modules.Rmd' failed with diagnostics:
    Column 6 of by= (5) is type 'list', not yet supported
    --- failed re-building ‘ii-modules.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘ii-modules.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 0.2.3
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘i-introduction.Rmd’ using rmarkdown
    --- finished re-building ‘i-introduction.Rmd’
    
    --- re-building ‘ii-modules.Rmd’ using rmarkdown
    
    Attaching package: 'igraph'
    
    The following objects are masked from 'package:stats':
    
     decompose, spectrum
    
    The following object is masked from 'package:base':
    
     union
    
    Loading required package: quickPlot
    Loading required package: reproducible
    
    Attaching package: 'reproducible'
    
    The following object is masked from 'package:igraph':
    
     %>%
    
    
    Attaching package: 'SpaDES.core'
    
    The following objects are masked from 'package:stats':
    
     end, start
    
    The following object is masked from 'package:utils':
    
     citation
    
    Loading required package: SpaDES.tools
    Loading required package: RandomFields
    Loading required package: sp
    Loading required package: RandomFieldsUtils
    
    Attaching package: 'RandomFields'
    
    The following object is masked from 'package:RandomFieldsUtils':
    
     RFoptions
    
    The following objects are masked from 'package:base':
    
     abs, acosh, asin, asinh, atan, atan2, atanh, cos, cosh, exp,
     expm1, floor, gamma, lgamma, log, log1p, log2, logb, max, min,
     round, sin, sinh, sqrt, tan, tanh, trunc
    
    
    Attaching package: 'data.table'
    
    The following object is masked from 'package:raster':
    
     shift
    
    Quitting from lines 637-677 (ii-modules.Rmd)
    Error: processing vignette 'ii-modules.Rmd' failed with diagnostics:
    Column 6 of by= (5) is type 'list', not yet supported
    --- failed re-building ‘ii-modules.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘ii-modules.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 0.2.3
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    
    Attaching package: 'igraph'
    
    The following objects are masked from 'package:stats':
    
     decompose, spectrum
    
    The following object is masked from 'package:base':
    
     union
    
    Loading required package: quickPlot
    Loading required package: reproducible
    
    Attaching package: 'reproducible'
    
    The following object is masked from 'package:igraph':
    
     %>%
    
    
    Attaching package: 'SpaDES.core'
    
    The following objects are masked from 'package:stats':
    
     end, start
    
    The following object is masked from 'package:utils':
    
     citation
    
    Loading required package: SpaDES.tools
    Loading required package: RandomFields
    Loading required package: sp
    Loading required package: RandomFieldsUtils
    
    Attaching package: 'RandomFields'
    
    The following object is masked from 'package:RandomFieldsUtils':
    
     RFoptions
    
    The following objects are masked from 'package:base':
    
     abs, acosh, asin, asinh, atan, atan2, atanh, cos, cosh, exp,
     expm1, floor, gamma, lgamma, log, log1p, log2, logb, max, min,
     round, sin, sinh, sqrt, tan, tanh, trunc
    
    
    Attaching package: 'data.table'
    
    The following object is masked from 'package:raster':
    
     shift
    
    Quitting from lines 637-677 (ii-modules.Rmd)
    Error: processing vignette ‘ii-modules.Rmd’ failed with diagnostics:
    Column 6 of by= (5) is type 'list', not yet supported
    Execution halted
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.2.3
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'igraph'
    
    The following objects are masked from 'package:stats':
    
     decompose, spectrum
    
    The following object is masked from 'package:base':
    
     union
    
    Loading required package: quickPlot
    Loading required package: reproducible
    
    Attaching package: 'reproducible'
    
    The following object is masked from 'package:igraph':
    
     %>%
    
    
    Attaching package: 'SpaDES.core'
    
    The following objects are masked from 'package:stats':
    
     end, start
    
    The following object is masked from 'package:utils':
    
     citation
    
    Loading required package: SpaDES.tools
    Loading required package: RandomFields
    Loading required package: sp
    Loading required package: RandomFieldsUtils
    
    Attaching package: 'RandomFields'
    
    The following object is masked from 'package:RandomFieldsUtils':
    
     RFoptions
    
    The following objects are masked from 'package:base':
    
     abs, acosh, asin, asinh, atan, atan2, atanh, cos, cosh, exp,
     expm1, floor, gamma, lgamma, log, log1p, log2, logb, max, min,
     round, sin, sinh, sqrt, tan, tanh, trunc
    
    Quitting from lines 377-383 (ii-modules.Rmd)
    Error: processing vignette 'ii-modules.Rmd' failed with diagnostics:
    there is no package called 'webshot'
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.2.3
Check: tests
Result: ERROR
     Running ‘test-all.R’ [142s/215s]
    Running the tests in ‘tests/test-all.R’ failed.
    Last 13 lines of output:
     Using cached copy of .inputObjects event in test module. Adding to memoised copy.
     ── 1. Error: 3 levels of parent and child modules load and show correctly (@test
     At optimal_modularity.c:85 : GLPK is not available, Unimplemented function call
     1: moduleGraph(mySim, FALSE) at testthat/test-module-deps-methods.R:198
     2: moduleGraph(mySim, FALSE)
     3: cluster_optimal(grph)
    
     Using cached copy of .inputObjects event in child6 module. Adding to memoised copy.
     Using cached copy of .inputObjects event in child6 module. Adding to memoised copy.
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 383 SKIPPED: 34 FAILED: 1
     1. Error: 3 levels of parent and child modules load and show correctly (@test-module-deps-methods.R#198)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-release-osx-x86_64

Version: 0.2.3
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    The following object is masked from 'package:utils':
    
     citation
    
    Loading required package: SpaDES.tools
    Loading required package: RandomFields
    Loading required package: sp
    Loading required package: RandomFieldsUtils
    
    Attaching package: 'RandomFields'
    
    The following object is masked from 'package:RandomFieldsUtils':
    
     RFoptions
    
    The following objects are masked from 'package:base':
    
     abs, acosh, asin, asinh, atan, atan2, atanh, cos, cosh, exp,
     expm1, floor, gamma, lgamma, log, log1p, log2, logb, max, min,
     round, sin, sinh, sqrt, tan, tanh, trunc
    
    Quitting from lines 377-383 (ii-modules.Rmd)
    Error: processing vignette 'ii-modules.Rmd' failed with diagnostics:
    cannot open the connection
    Execution halted
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 0.2.3
Check: tests
Result: ERROR
     Running ‘test-all.R’ [153s/227s]
    Running the tests in ‘tests/test-all.R’ failed.
    Last 13 lines of output:
     Using cached copy of .inputObjects event in test module. Adding to memoised copy.
     ── 1. Error: 3 levels of parent and child modules load and show correctly (@test
     At optimal_modularity.c:85 : GLPK is not available, Unimplemented function call
     1: moduleGraph(mySim, FALSE) at testthat/test-module-deps-methods.R:198
     2: moduleGraph(mySim, FALSE)
     3: cluster_optimal(grph)
    
     Using cached copy of .inputObjects event in child6 module. Adding to memoised copy.
     Using cached copy of .inputObjects event in child6 module. Adding to memoised copy.
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 383 SKIPPED: 34 FAILED: 1
     1. Error: 3 levels of parent and child modules load and show correctly (@test-module-deps-methods.R#198)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-oldrel-osx-x86_64