CRAN Package Check Results for Package SCpubr

Last updated on 2023-01-27 23:38:09 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1.2 14.72 299.80 314.52 OK
r-devel-linux-x86_64-debian-gcc 1.1.2 11.15 216.03 227.18 OK
r-devel-linux-x86_64-fedora-clang 1.1.2 394.64 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1.2 377.56 NOTE
r-devel-windows-x86_64 1.1.2 51.00 355.00 406.00 OK
r-patched-linux-x86_64 1.1.2 17.88 262.22 280.10 OK
r-release-linux-x86_64 1.1.2 12.26 274.89 287.15 OK
r-release-macos-arm64 1.1.2 93.00 ERROR
r-release-macos-x86_64 1.1.2 134.00 ERROR
r-release-windows-x86_64 1.1.2 41.00 348.00 389.00 OK
r-oldrel-macos-arm64 1.1.2 94.00 ERROR
r-oldrel-macos-x86_64 1.1.2 141.00 ERROR
r-oldrel-windows-ix86+x86_64 1.1.2 21.00 345.00 366.00 ERROR

Additional issues

noSuggests

Check Details

Version: 1.1.2
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘AUCell’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.1.2
Check: Rd cross-references
Result: NOTE
    Undeclared package ‘SeuratObject’ in Rd xrefs
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.1.2
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     'Nebulosa', 'infercnv', 'UCell', 'AUCell'
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 1.1.2
Check: Rd cross-references
Result: NOTE
    Packages unavailable to check Rd xrefs: ‘infercnv’, ‘UCell’
Flavors: r-release-macos-arm64, r-release-macos-x86_64

Version: 1.1.2
Check: tests
Result: ERROR
     Running ‘testthat.R’ [50s/52s]
    Running the tests in ‘tests/testthat.R’ failed.
    Last 13 lines of output:
     • On CRAN (417)
    
     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error ('test-do_FunctionalAnnotationPlot.R:5'): do_FunctionalAnnotationPlot: CRAN essential tests ──
     Error in ``[.data.frame`(p.build$data[[7]], c("label", "node"))`: undefined columns selected
     Backtrace:
     ▆
     1. └─SCpubr::do_FunctionalAnnotationPlot(...) at test-do_FunctionalAnnotationPlot.R:5:4
     2. └─SCpubr:::do_EnrichedTermTreePlot(...)
     3. ├─p.build$data[[7]][c("label", "node")]
     4. └─base::`[.data.frame`(p.build$data[[7]], c("label", "node"))
    
     [ FAIL 1 | WARN 0 | SKIP 417 | PASS 87 ]
     Error: Test failures
     Execution halted
Flavor: r-release-macos-arm64

Version: 1.1.2
Check: tests
Result: ERROR
     Running ‘testthat.R’ [74s/75s]
    Running the tests in ‘tests/testthat.R’ failed.
    Last 13 lines of output:
     • On CRAN (417)
    
     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error ('test-do_FunctionalAnnotationPlot.R:5'): do_FunctionalAnnotationPlot: CRAN essential tests ──
     Error in ``[.data.frame`(p.build$data[[7]], c("label", "node"))`: undefined columns selected
     Backtrace:
     ▆
     1. └─SCpubr::do_FunctionalAnnotationPlot(...) at test-do_FunctionalAnnotationPlot.R:5:4
     2. └─SCpubr:::do_EnrichedTermTreePlot(...)
     3. ├─p.build$data[[7]][c("label", "node")]
     4. └─base::`[.data.frame`(p.build$data[[7]], c("label", "node"))
    
     [ FAIL 1 | WARN 0 | SKIP 417 | PASS 87 ]
     Error: Test failures
     Execution halted
Flavor: r-release-macos-x86_64

Version: 1.1.2
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘infercnv’
    Unknown package ‘UCell’ in Rd xrefs
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 1.1.2
Check: tests
Result: ERROR
     Running ‘testthat.R’ [48s/50s]
    Running the tests in ‘tests/testthat.R’ failed.
    Last 13 lines of output:
     color = color2)`: arguments imply differing number of rows: 5, 0
     Backtrace:
     ▆
     1. └─SCpubr::do_FunctionalAnnotationPlot(...) at test-do_FunctionalAnnotationPlot.R:5:4
     2. └─SCpubr:::do_EnrichedTermTreePlot(...)
     3. ├─enrichplot::treeplot(...)
     4. └─enrichplot::treeplot(...)
     5. └─enrichplot:::treeplot.enrichResult(...)
     6. └─enrichplot:::group_tree(...)
     7. └─enrichplot:::add_cladelab(...)
     8. └─base::data.frame(...)
    
     [ FAIL 1 | WARN 0 | SKIP 417 | PASS 87 ]
     Error: Test failures
     Execution halted
Flavor: r-oldrel-macos-arm64

Version: 1.1.2
Check: tests
Result: ERROR
     Running ‘testthat.R’ [73s/76s]
    Running the tests in ‘tests/testthat.R’ failed.
    Last 13 lines of output:
     color = color2)`: arguments imply differing number of rows: 5, 0
     Backtrace:
     ▆
     1. └─SCpubr::do_FunctionalAnnotationPlot(...) at test-do_FunctionalAnnotationPlot.R:5:4
     2. └─SCpubr:::do_EnrichedTermTreePlot(...)
     3. ├─enrichplot::treeplot(...)
     4. └─enrichplot::treeplot(...)
     5. └─enrichplot:::treeplot.enrichResult(...)
     6. └─enrichplot:::group_tree(...)
     7. └─enrichplot:::add_cladelab(...)
     8. └─base::data.frame(...)
    
     [ FAIL 1 | WARN 0 | SKIP 417 | PASS 87 ]
     Error: Test failures
     Execution halted
Flavor: r-oldrel-macos-x86_64

Version: 1.1.2
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'UCell'
Flavor: r-oldrel-windows-ix86+x86_64

Version: 1.1.2
Check: dependencies in R code
Result: WARN
    Missing or unexported object: 'AUCell::AUCell_run'
Flavor: r-oldrel-windows-ix86+x86_64

Version: 1.1.2
Check: Rd cross-references
Result: NOTE
    Unknown package 'UCell' in Rd xrefs
Flavor: r-oldrel-windows-ix86+x86_64

Version: 1.1.2
Check: tests
Result: ERROR
     Running 'testthat.R' [211s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(SCpubr)
     ---------------------------------------------------------------
     SCpubr
    
     If you use SCpubr in your research, please cite it accordingly:
     Blanco-Carmona, E. Generating publication ready visualizations for Single Cell transcriptomics using SCpubr. bioRxiv (2022) doi:10.1101/2022.02.28.482303.
    
     If the package is useful to you, consider leaving a Star in the GitHub repo: https://github.com/enblacar/SCpubr/stargazers
    
     Keep track of the package updates on Twitter (@Enblacar) or in https://github.com/enblacar/SCpubr/blob/main/NEWS.md
    
     To suppress this startup message, use:
     suppressPackageStartupMessages(library('SCpubr'))
     ---------------------------------------------------------------
     > test_check("SCpubr")
    
    
     [ FAIL 1 | WARN 0 | SKIP 440 | PASS 90 ]
    
     == Skipped tests ===============================================================
     * On CRAN (440)
    
     == Failed tests ================================================================
     -- Error ('test-do_FunctionalAnnotationPlot.R:5'): do_FunctionalAnnotationPlot: CRAN essential tests --
     Error in ``[.data.frame`(p.build$data[[7]], c("label", "node"))`: undefined columns selected
     Backtrace:
     x
     1. \-SCpubr::do_FunctionalAnnotationPlot(...) at test-do_FunctionalAnnotationPlot.R:5:4
     2. \-SCpubr:::do_EnrichedTermTreePlot(...)
     3. +-p.build$data[[7]][c("label", "node")]
     4. \-base::`[.data.frame`(p.build$data[[7]], c("label", "node"))
    
     [ FAIL 1 | WARN 0 | SKIP 440 | PASS 90 ]
     Error: Test failures
     Execution halted
Flavor: r-oldrel-windows-ix86+x86_64