CRAN Package Check Results for Package PeakSegJoint

Last updated on 2023-03-30 05:49:17 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2022.4.6 9.18 130.47 139.65 WARN
r-devel-linux-x86_64-debian-gcc 2022.4.6 5.95 98.00 103.95 WARN
r-devel-linux-x86_64-fedora-clang 2022.4.6 172.22 WARN
r-devel-linux-x86_64-fedora-gcc 2022.4.6 174.57 WARN
r-devel-windows-x86_64 2022.4.6 33.00 0.00 33.00 OK
r-patched-linux-x86_64 2022.4.6 9.64 122.99 132.63 WARN
r-release-linux-x86_64 2022.4.6 7.84 123.56 131.40 OK
r-release-macos-arm64 2022.4.6 49.00 OK
r-release-macos-x86_64 2022.4.6 86.00 OK
r-release-windows-x86_64 2022.4.6 37.00 175.00 212.00 OK
r-oldrel-macos-arm64 2022.4.6 48.00 OK
r-oldrel-macos-x86_64 2022.4.6 73.00 OK
r-oldrel-windows-ix86+x86_64 2022.4.6 30.00 181.00 211.00 ERROR

Check Details

Version: 2022.4.6
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     PeakSegJoint_interface.c:113:32: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
    See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/PeakSegJoint.Rcheck/00install.out’ for details.
    * used C compiler: ‘Debian clang version 15.0.6’
Flavor: r-devel-linux-x86_64-debian-clang

Version: 2022.4.6
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     PeakSegJoint_interface.c:113:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
    See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/PeakSegJoint.Rcheck/00install.out’ for details.
    * used C compiler: ‘gcc-12 (Debian 12.2.0-14) 12.2.0’
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 2022.4.6
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     PeakSegJoint_interface.c:113:32: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
    See ‘/data/gannet/ripley/R/packages/tests-clang/PeakSegJoint.Rcheck/00install.out’ for details.
    * used C compiler: ‘clang version 16.0.0’
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 2022.4.6
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     PeakSegJoint_interface.c:113:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
    See ‘/data/gannet/ripley/R/packages/tests-devel/PeakSegJoint.Rcheck/00install.out’ for details.
    * used C compiler: ‘gcc (GCC) 12.2.1 20221121 (Red Hat 12.2.1-4)’
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 2022.4.6
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     PeakSegJoint_interface.c:113:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
    See ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/PeakSegJoint.Rcheck/00install.out’ for details.
    * used C compiler: ‘gcc-11 (Debian 11.3.0-12) 11.3.0’
Flavor: r-patched-linux-x86_64

Version: 2022.4.6
Check: running examples for arch ‘x64’
Result: ERROR
    Running examples in 'PeakSegJoint-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: PeakSegJointError
    > ### Title: PeakSegJointError
    > ### Aliases: PeakSegJointError
    >
    > ### ** Examples
    >
    >
    > library(PeakSegJoint)
    > data(H3K36me3.TDH.other.chunk1, envir=environment())
    > lims <- c(43000000, 43200000) # left
    > some.counts <-
    + subset(H3K36me3.TDH.other.chunk1$counts,
    + lims[1] < chromEnd & chromStart < lims[2])
    > some.regions <-
    + subset(H3K36me3.TDH.other.chunk1$regions,
    + lims[1] < chromEnd & chromStart < lims[2])
    > fit <- PeakSegJointSeveral(some.counts)
Flavor: r-oldrel-windows-ix86+x86_64

Version: 2022.4.6
Check: running tests for arch ‘x64’
Result: ERROR
     Running 'testthat.R' [2s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > suite <- Sys.getenv("TEST_SUITE")
     > if(suite=="")suite <- NULL
     > test_check("PeakSegJoint", filter=suite)
     Loading required package: PeakSegJoint
Flavor: r-oldrel-windows-ix86+x86_64