CRAN Package Check Results for Package PLMIX

Last updated on 2019-06-18 22:01:58 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.0.1 140.64 79.28 219.92 OK
r-devel-linux-x86_64-debian-gcc 2.0.1 101.86 63.25 165.11 OK
r-devel-linux-x86_64-fedora-clang 2.0.1 337.06 OK
r-devel-linux-x86_64-fedora-gcc 2.0.1 287.82 OK
r-devel-windows-ix86+x86_64 2.0.1 392.00 165.00 557.00 ERROR
r-patched-linux-x86_64 2.0.1 124.18 78.58 202.76 OK
r-patched-solaris-x86 2.0.1 316.20 OK
r-release-linux-x86_64 2.0.1 128.49 79.85 208.34 OK
r-release-windows-ix86+x86_64 2.0.1 360.00 165.00 525.00 ERROR
r-release-osx-x86_64 2.0.1 OK
r-oldrel-windows-ix86+x86_64 2.0.1 249.00 192.00 441.00 OK
r-oldrel-osx-x86_64 2.0.1 OK

Check Details

Version: 2.0.1
Check: running examples for arch ‘i386’
Result: ERROR
    Running examples in 'PLMIX-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: label_switchPLMIX
    > ### Title: Label switching adjustment for Bayesian mixtures of
    > ### Plackett-Luce models
    > ### Aliases: label_switchPLMIX
    >
    > ### ** Examples
    >
    >
    > data(d_carconf)
    >
    > K <- ncol(d_carconf)
    > n.start <- 2
    >
    > MAP_1 <- mapPLMIX_multistart(pi_inv=d_carconf, K=K, G=1,
    + n_start=n.start, n_iter=400*1)
    [1] "Multiple starting point #1"
    [1] "Multiple starting point #2"
    [1] "INITIALIZATION 1"
    Warning in mapPLMIX(pi_inv = pi_inv, K = K, G = G, init = init[[i]], n_iter = n_iter, :
     initial support parameters for each mixture component must
     add to one ==> input arguments has been normalized!
    [1] "Starting value # 1 => best log-likelihood so far = -2639.18237308121"
    [1] "INITIALIZATION 2"
    [1] "Starting value # 2 => best log-likelihood so far = -2639.18231462136"
    >
    > MAP_2 <- mapPLMIX_multistart(pi_inv=d_carconf, K=K, G=2,
    + n_start=n.start, n_iter=400*2)
    [1] "Multiple starting point #1"
    [1] "Multiple starting point #2"
    [1] "INITIALIZATION 1"
    [1] "Starting value # 1 => best log-likelihood so far = -2623.03842396706"
    [1] "INITIALIZATION 2"
    Warning in mapPLMIX(pi_inv = pi_inv, K = K, G = G, init = init[[i]], n_iter = n_iter, :
     initial support parameters for each mixture component must
     add to one ==> input arguments has been normalized!
    [1] "Starting value # 2 => best log-likelihood so far = -2623.03842396706"
    >
    > MAP_3 <- mapPLMIX_multistart(pi_inv=d_carconf, K=K, G=3,
    + n_start=n.start, n_iter=400*3)
    [1] "Multiple starting point #1"
    [1] "Multiple starting point #2"
    [1] "INITIALIZATION 1"
    Warning in mapPLMIX(pi_inv = pi_inv, K = K, G = G, init = init[[i]], n_iter = n_iter, :
     initial support parameters for each mixture component must
     add to one ==> input arguments has been normalized!
    [1] "Starting value # 1 => best log-likelihood so far = -2615.69663552729"
    [1] "INITIALIZATION 2"
    [1] "Starting value # 2 => best log-likelihood so far = -2615.69663552729"
    >
    > mcmc_iter <- 30
    > burnin <- 10
    >
    > GIBBS_1 <- gibbsPLMIX(pi_inv=d_carconf, K=K, G=1, n_iter=mcmc_iter,
    + n_burn=burnin, init=list(p=MAP_1$mod$P_map,
    + z=binary_group_ind(MAP_1$mod$class_map,G=1)))
    > GIBBS_2 <- gibbsPLMIX(pi_inv=d_carconf, K=K, G=2, n_iter=mcmc_iter,
    + n_burn=burnin, init=list(p=MAP_2$mod$P_map,
    + z=binary_group_ind(MAP_2$mod$class_map,G=2)))
    > GIBBS_3 <- gibbsPLMIX(pi_inv=d_carconf, K=K, G=3, n_iter=mcmc_iter,
    + n_burn=burnin, init=list(p=MAP_3$mod$P_map,
    + z=binary_group_ind(MAP_3$mod$class_map,G=3)))
    >
    > # Adjusting the MCMC samples for label switching
    >
    > require(doParallel)
    Loading required package: doParallel
    Loading required package: foreach
    Loading required package: iterators
    Loading required package: parallel
    > run_in_parallel <- !is.na(detectCores())
    > if(run_in_parallel){
    + registerDoParallel(2)
    + getDoParWorkers()
    + }
    [1] 2
    > LS <- label_switchPLMIX(pi_inv=d_carconf, seq_G=1:3,
    + MCMCsampleP=list(GIBBS_1$P, GIBBS_2$P, GIBBS_3$P),
    + MCMCsampleW=list(GIBBS_1$W, GIBBS_2$W, GIBBS_3$W),
    + MAPestP=list(MAP_1$mod$P_map, MAP_2$mod$P_map, MAP_3$mod$P_map),
    + MAPestW=list(MAP_1$mod$W_map, MAP_2$mod$W_map, MAP_3$mod$W_map),
    + parallel = run_in_parallel)
    > str(LS)
    List of 2
     $ final_sampleP:List of 3
     ..$ G_1: num [1, 1:6, 1:20] 0.123 0.222 0.201 0.188 0.075 ...
     ..$ G_2: num [1:2, 1:6, 1:20] 0.6197 0.0834 0.0917 0.2688 0.1103 ...
     ..$ G_3: num [1:3, 1:6, 1:20] 0.9471 0.3771 0.0744 0.0294 0.0984 ...
     $ final_sampleW:List of 3
     ..$ G_1: num [1:20, 1] 1 1 1 1 1 1 1 1 1 1 ...
     ..$ G_2: num [1:20, 1:2] 0.241 0.241 0.223 0.184 0.192 ...
     ..$ G_3: num [1:20, 1:3] 0.0748 0.1215 0.0779 0.0816 0.085 ...
    >
    >
    >
    >
    > cleanEx()
    
    detaching 'package:doParallel', 'package:parallel',
     'package:iterators', 'package:foreach'
    
    Error: connections left open:
     <-CRANwin.fb05.statistik.uni-dortmund.de:11776 (sockconn)
     <-CRANwin.fb05.statistik.uni-dortmund.de:11776 (sockconn)
    Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 2.0.1
Check: running examples for arch ‘x64’
Result: ERROR
    Running examples in 'PLMIX-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: label_switchPLMIX
    > ### Title: Label switching adjustment for Bayesian mixtures of
    > ### Plackett-Luce models
    > ### Aliases: label_switchPLMIX
    >
    > ### ** Examples
    >
    >
    > data(d_carconf)
    >
    > K <- ncol(d_carconf)
    > n.start <- 2
    >
    > MAP_1 <- mapPLMIX_multistart(pi_inv=d_carconf, K=K, G=1,
    + n_start=n.start, n_iter=400*1)
    [1] "Multiple starting point #1"
    [1] "Multiple starting point #2"
    [1] "INITIALIZATION 1"
    [1] "Starting value # 1 => best log-likelihood so far = -2639.18237308121"
    [1] "INITIALIZATION 2"
    [1] "Starting value # 2 => best log-likelihood so far = -2639.18231462136"
    >
    > MAP_2 <- mapPLMIX_multistart(pi_inv=d_carconf, K=K, G=2,
    + n_start=n.start, n_iter=400*2)
    [1] "Multiple starting point #1"
    [1] "Multiple starting point #2"
    [1] "INITIALIZATION 1"
    Warning in mapPLMIX(pi_inv = pi_inv, K = K, G = G, init = init[[i]], n_iter = n_iter, :
     initial support parameters for each mixture component must
     add to one ==> input arguments has been normalized!
    [1] "Starting value # 1 => best log-likelihood so far = -2623.03842396706"
    [1] "INITIALIZATION 2"
    [1] "Starting value # 2 => best log-likelihood so far = -2623.03842396706"
    >
    > MAP_3 <- mapPLMIX_multistart(pi_inv=d_carconf, K=K, G=3,
    + n_start=n.start, n_iter=400*3)
    [1] "Multiple starting point #1"
    [1] "Multiple starting point #2"
    [1] "INITIALIZATION 1"
    Warning in mapPLMIX(pi_inv = pi_inv, K = K, G = G, init = init[[i]], n_iter = n_iter, :
     initial support parameters for each mixture component must
     add to one ==> input arguments has been normalized!
    [1] "Starting value # 1 => best log-likelihood so far = -2615.69663552729"
    [1] "INITIALIZATION 2"
    Warning in mapPLMIX(pi_inv = pi_inv, K = K, G = G, init = init[[i]], n_iter = n_iter, :
     initial support parameters for each mixture component must
     add to one ==> input arguments has been normalized!
    [1] "Starting value # 2 => best log-likelihood so far = -2615.69663552729"
    >
    > mcmc_iter <- 30
    > burnin <- 10
    >
    > GIBBS_1 <- gibbsPLMIX(pi_inv=d_carconf, K=K, G=1, n_iter=mcmc_iter,
    + n_burn=burnin, init=list(p=MAP_1$mod$P_map,
    + z=binary_group_ind(MAP_1$mod$class_map,G=1)))
    > GIBBS_2 <- gibbsPLMIX(pi_inv=d_carconf, K=K, G=2, n_iter=mcmc_iter,
    + n_burn=burnin, init=list(p=MAP_2$mod$P_map,
    + z=binary_group_ind(MAP_2$mod$class_map,G=2)))
    > GIBBS_3 <- gibbsPLMIX(pi_inv=d_carconf, K=K, G=3, n_iter=mcmc_iter,
    + n_burn=burnin, init=list(p=MAP_3$mod$P_map,
    + z=binary_group_ind(MAP_3$mod$class_map,G=3)))
    >
    > # Adjusting the MCMC samples for label switching
    >
    > require(doParallel)
    Loading required package: doParallel
    Loading required package: foreach
    Loading required package: iterators
    Loading required package: parallel
    > run_in_parallel <- !is.na(detectCores())
    > if(run_in_parallel){
    + registerDoParallel(2)
    + getDoParWorkers()
    + }
    [1] 2
    > LS <- label_switchPLMIX(pi_inv=d_carconf, seq_G=1:3,
    + MCMCsampleP=list(GIBBS_1$P, GIBBS_2$P, GIBBS_3$P),
    + MCMCsampleW=list(GIBBS_1$W, GIBBS_2$W, GIBBS_3$W),
    + MAPestP=list(MAP_1$mod$P_map, MAP_2$mod$P_map, MAP_3$mod$P_map),
    + MAPestW=list(MAP_1$mod$W_map, MAP_2$mod$W_map, MAP_3$mod$W_map),
    + parallel = run_in_parallel)
    > str(LS)
    List of 2
     $ final_sampleP:List of 3
     ..$ G_1: num [1, 1:6, 1:20] 0.123 0.222 0.201 0.188 0.075 ...
     ..$ G_2: num [1:2, 1:6, 1:20] 0.6197 0.0834 0.0917 0.2688 0.1103 ...
     ..$ G_3: num [1:3, 1:6, 1:20] 0.9471 0.3771 0.0744 0.0294 0.0984 ...
     $ final_sampleW:List of 3
     ..$ G_1: num [1:20, 1] 1 1 1 1 1 1 1 1 1 1 ...
     ..$ G_2: num [1:20, 1:2] 0.241 0.241 0.223 0.184 0.192 ...
     ..$ G_3: num [1:20, 1:3] 0.0748 0.1215 0.0779 0.0816 0.085 ...
    >
    >
    >
    >
    > cleanEx()
    
    detaching 'package:doParallel', 'package:parallel',
     'package:iterators', 'package:foreach'
    
    Error: connections left open:
     <-CRANwin.fb05.statistik.uni-dortmund.de:11821 (sockconn)
     <-CRANwin.fb05.statistik.uni-dortmund.de:11821 (sockconn)
    Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 2.0.1
Check: running examples for arch ‘i386’
Result: ERROR
    Running examples in 'PLMIX-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: label_switchPLMIX
    > ### Title: Label switching adjustment for Bayesian mixtures of
    > ### Plackett-Luce models
    > ### Aliases: label_switchPLMIX
    >
    > ### ** Examples
    >
    >
    > data(d_carconf)
    >
    > K <- ncol(d_carconf)
    > n.start <- 2
    >
    > MAP_1 <- mapPLMIX_multistart(pi_inv=d_carconf, K=K, G=1,
    + n_start=n.start, n_iter=400*1)
    [1] "Multiple starting point #1"
    [1] "Multiple starting point #2"
    [1] "INITIALIZATION 1"
    Warning in mapPLMIX(pi_inv = pi_inv, K = K, G = G, init = init[[i]], n_iter = n_iter, :
     initial support parameters for each mixture component must
     add to one ==> input arguments has been normalized!
    [1] "Starting value # 1 => best log-likelihood so far = -2639.18237308121"
    [1] "INITIALIZATION 2"
    [1] "Starting value # 2 => best log-likelihood so far = -2639.18231462136"
    >
    > MAP_2 <- mapPLMIX_multistart(pi_inv=d_carconf, K=K, G=2,
    + n_start=n.start, n_iter=400*2)
    [1] "Multiple starting point #1"
    [1] "Multiple starting point #2"
    [1] "INITIALIZATION 1"
    [1] "Starting value # 1 => best log-likelihood so far = -2623.03842396706"
    [1] "INITIALIZATION 2"
    Warning in mapPLMIX(pi_inv = pi_inv, K = K, G = G, init = init[[i]], n_iter = n_iter, :
     initial support parameters for each mixture component must
     add to one ==> input arguments has been normalized!
    [1] "Starting value # 2 => best log-likelihood so far = -2623.03842396706"
    >
    > MAP_3 <- mapPLMIX_multistart(pi_inv=d_carconf, K=K, G=3,
    + n_start=n.start, n_iter=400*3)
    [1] "Multiple starting point #1"
    [1] "Multiple starting point #2"
    [1] "INITIALIZATION 1"
    Warning in mapPLMIX(pi_inv = pi_inv, K = K, G = G, init = init[[i]], n_iter = n_iter, :
     initial support parameters for each mixture component must
     add to one ==> input arguments has been normalized!
    [1] "Starting value # 1 => best log-likelihood so far = -2615.69663552729"
    [1] "INITIALIZATION 2"
    [1] "Starting value # 2 => best log-likelihood so far = -2615.69663552729"
    >
    > mcmc_iter <- 30
    > burnin <- 10
    >
    > GIBBS_1 <- gibbsPLMIX(pi_inv=d_carconf, K=K, G=1, n_iter=mcmc_iter,
    + n_burn=burnin, init=list(p=MAP_1$mod$P_map,
    + z=binary_group_ind(MAP_1$mod$class_map,G=1)))
    > GIBBS_2 <- gibbsPLMIX(pi_inv=d_carconf, K=K, G=2, n_iter=mcmc_iter,
    + n_burn=burnin, init=list(p=MAP_2$mod$P_map,
    + z=binary_group_ind(MAP_2$mod$class_map,G=2)))
    > GIBBS_3 <- gibbsPLMIX(pi_inv=d_carconf, K=K, G=3, n_iter=mcmc_iter,
    + n_burn=burnin, init=list(p=MAP_3$mod$P_map,
    + z=binary_group_ind(MAP_3$mod$class_map,G=3)))
    >
    > # Adjusting the MCMC samples for label switching
    >
    > require(doParallel)
    Loading required package: doParallel
    Loading required package: foreach
    Loading required package: iterators
    Loading required package: parallel
    > run_in_parallel <- !is.na(detectCores())
    > if(run_in_parallel){
    + registerDoParallel(2)
    + getDoParWorkers()
    + }
    [1] 2
    > LS <- label_switchPLMIX(pi_inv=d_carconf, seq_G=1:3,
    + MCMCsampleP=list(GIBBS_1$P, GIBBS_2$P, GIBBS_3$P),
    + MCMCsampleW=list(GIBBS_1$W, GIBBS_2$W, GIBBS_3$W),
    + MAPestP=list(MAP_1$mod$P_map, MAP_2$mod$P_map, MAP_3$mod$P_map),
    + MAPestW=list(MAP_1$mod$W_map, MAP_2$mod$W_map, MAP_3$mod$W_map),
    + parallel = run_in_parallel)
    > str(LS)
    List of 2
     $ final_sampleP:List of 3
     ..$ G_1: num [1, 1:6, 1:20] 0.123 0.222 0.201 0.188 0.075 ...
     ..$ G_2: num [1:2, 1:6, 1:20] 0.6197 0.0834 0.0917 0.2688 0.1103 ...
     ..$ G_3: num [1:3, 1:6, 1:20] 0.9471 0.3771 0.0744 0.0294 0.0984 ...
     $ final_sampleW:List of 3
     ..$ G_1: num [1:20, 1] 1 1 1 1 1 1 1 1 1 1 ...
     ..$ G_2: num [1:20, 1:2] 0.241 0.241 0.223 0.184 0.192 ...
     ..$ G_3: num [1:20, 1:3] 0.0748 0.1215 0.0779 0.0816 0.085 ...
    >
    >
    >
    >
    > cleanEx()
    
    detaching 'package:doParallel', 'package:parallel',
     'package:iterators', 'package:foreach'
    
    Error: connections left open:
     <-CRANwin.fb05.statistik.uni-dortmund.de:11317 (sockconn)
     <-CRANwin.fb05.statistik.uni-dortmund.de:11317 (sockconn)
    Execution halted
Flavor: r-release-windows-ix86+x86_64

Version: 2.0.1
Check: running examples for arch ‘x64’
Result: ERROR
    Running examples in 'PLMIX-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: label_switchPLMIX
    > ### Title: Label switching adjustment for Bayesian mixtures of
    > ### Plackett-Luce models
    > ### Aliases: label_switchPLMIX
    >
    > ### ** Examples
    >
    >
    > data(d_carconf)
    >
    > K <- ncol(d_carconf)
    > n.start <- 2
    >
    > MAP_1 <- mapPLMIX_multistart(pi_inv=d_carconf, K=K, G=1,
    + n_start=n.start, n_iter=400*1)
    [1] "Multiple starting point #1"
    [1] "Multiple starting point #2"
    [1] "INITIALIZATION 1"
    [1] "Starting value # 1 => best log-likelihood so far = -2639.18237308121"
    [1] "INITIALIZATION 2"
    [1] "Starting value # 2 => best log-likelihood so far = -2639.18231462136"
    >
    > MAP_2 <- mapPLMIX_multistart(pi_inv=d_carconf, K=K, G=2,
    + n_start=n.start, n_iter=400*2)
    [1] "Multiple starting point #1"
    [1] "Multiple starting point #2"
    [1] "INITIALIZATION 1"
    Warning in mapPLMIX(pi_inv = pi_inv, K = K, G = G, init = init[[i]], n_iter = n_iter, :
     initial support parameters for each mixture component must
     add to one ==> input arguments has been normalized!
    [1] "Starting value # 1 => best log-likelihood so far = -2623.03842396706"
    [1] "INITIALIZATION 2"
    [1] "Starting value # 2 => best log-likelihood so far = -2623.03842396706"
    >
    > MAP_3 <- mapPLMIX_multistart(pi_inv=d_carconf, K=K, G=3,
    + n_start=n.start, n_iter=400*3)
    [1] "Multiple starting point #1"
    [1] "Multiple starting point #2"
    [1] "INITIALIZATION 1"
    Warning in mapPLMIX(pi_inv = pi_inv, K = K, G = G, init = init[[i]], n_iter = n_iter, :
     initial support parameters for each mixture component must
     add to one ==> input arguments has been normalized!
    [1] "Starting value # 1 => best log-likelihood so far = -2615.69663552729"
    [1] "INITIALIZATION 2"
    Warning in mapPLMIX(pi_inv = pi_inv, K = K, G = G, init = init[[i]], n_iter = n_iter, :
     initial support parameters for each mixture component must
     add to one ==> input arguments has been normalized!
    [1] "Starting value # 2 => best log-likelihood so far = -2615.69663552729"
    >
    > mcmc_iter <- 30
    > burnin <- 10
    >
    > GIBBS_1 <- gibbsPLMIX(pi_inv=d_carconf, K=K, G=1, n_iter=mcmc_iter,
    + n_burn=burnin, init=list(p=MAP_1$mod$P_map,
    + z=binary_group_ind(MAP_1$mod$class_map,G=1)))
    > GIBBS_2 <- gibbsPLMIX(pi_inv=d_carconf, K=K, G=2, n_iter=mcmc_iter,
    + n_burn=burnin, init=list(p=MAP_2$mod$P_map,
    + z=binary_group_ind(MAP_2$mod$class_map,G=2)))
    > GIBBS_3 <- gibbsPLMIX(pi_inv=d_carconf, K=K, G=3, n_iter=mcmc_iter,
    + n_burn=burnin, init=list(p=MAP_3$mod$P_map,
    + z=binary_group_ind(MAP_3$mod$class_map,G=3)))
    >
    > # Adjusting the MCMC samples for label switching
    >
    > require(doParallel)
    Loading required package: doParallel
    Loading required package: foreach
    Loading required package: iterators
    Loading required package: parallel
    > run_in_parallel <- !is.na(detectCores())
    > if(run_in_parallel){
    + registerDoParallel(2)
    + getDoParWorkers()
    + }
    [1] 2
    > LS <- label_switchPLMIX(pi_inv=d_carconf, seq_G=1:3,
    + MCMCsampleP=list(GIBBS_1$P, GIBBS_2$P, GIBBS_3$P),
    + MCMCsampleW=list(GIBBS_1$W, GIBBS_2$W, GIBBS_3$W),
    + MAPestP=list(MAP_1$mod$P_map, MAP_2$mod$P_map, MAP_3$mod$P_map),
    + MAPestW=list(MAP_1$mod$W_map, MAP_2$mod$W_map, MAP_3$mod$W_map),
    + parallel = run_in_parallel)
    > str(LS)
    List of 2
     $ final_sampleP:List of 3
     ..$ G_1: num [1, 1:6, 1:20] 0.123 0.222 0.201 0.188 0.075 ...
     ..$ G_2: num [1:2, 1:6, 1:20] 0.6197 0.0834 0.0917 0.2688 0.1103 ...
     ..$ G_3: num [1:3, 1:6, 1:20] 0.9471 0.3771 0.0744 0.0294 0.0984 ...
     $ final_sampleW:List of 3
     ..$ G_1: num [1:20, 1] 1 1 1 1 1 1 1 1 1 1 ...
     ..$ G_2: num [1:20, 1:2] 0.241 0.241 0.223 0.184 0.192 ...
     ..$ G_3: num [1:20, 1:3] 0.0748 0.1215 0.0779 0.0816 0.085 ...
    >
    >
    >
    >
    > cleanEx()
    
    detaching 'package:doParallel', 'package:parallel',
     'package:iterators', 'package:foreach'
    
    Error: connections left open:
     <-CRANwin.fb05.statistik.uni-dortmund.de:11363 (sockconn)
     <-CRANwin.fb05.statistik.uni-dortmund.de:11363 (sockconn)
    Execution halted
Flavor: r-release-windows-ix86+x86_64