Last updated on 2025-02-17 21:50:45 CET.
Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
---|---|---|---|---|---|---|
r-devel-linux-x86_64-debian-clang | 11.0 | 36.78 | 171.09 | 207.87 | OK | |
r-devel-linux-x86_64-debian-gcc | 11.0 | 27.63 | 113.73 | 141.36 | OK | |
r-devel-linux-x86_64-fedora-clang | 11.0 | 341.16 | OK | |||
r-devel-linux-x86_64-fedora-gcc | 11.1 | 324.41 | ERROR | |||
r-devel-macos-arm64 | 11.0 | 88.00 | OK | |||
r-devel-macos-x86_64 | 11.0 | 186.00 | OK | |||
r-devel-windows-x86_64 | 11.0 | 52.00 | 166.00 | 218.00 | OK | |
r-patched-linux-x86_64 | 11.0 | 38.89 | 140.61 | 179.50 | NOTE | |
r-release-linux-x86_64 | 11.0 | 37.16 | 135.67 | 172.83 | NOTE | |
r-release-macos-arm64 | 11.0 | 55.00 | NOTE | |||
r-release-macos-x86_64 | 11.0 | 94.00 | NOTE | |||
r-release-windows-x86_64 | 11.0 | 56.00 | 168.00 | 224.00 | NOTE | |
r-oldrel-macos-arm64 | 11.0 | 104.00 | NOTE | |||
r-oldrel-macos-x86_64 | 11.0 | 242.00 | NOTE | |||
r-oldrel-windows-x86_64 | 11.0 | 61.00 | 192.00 | 253.00 | NOTE |
Version: 11.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘NNSvignette_Classification.Rmd’ using rmarkdown
--- finished re-building ‘NNSvignette_Classification.Rmd’
--- re-building ‘NNSvignette_Clustering_and_Regression.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/NNS.Rcheck/vign_test/NNS/vignettes/NNSvignette_Clustering_and_Regression_files/figure-html/linear-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13120 bytes
Input file size = 13210 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9948
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9948
Output IDAT size = 9948 bytes (3172 bytes decrease)
Output file size = 10026 bytes (3184 bytes = 24.10% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/NNS.Rcheck/vign_test/NNS/vignettes/NNSvignette_Clustering_and_Regression_files/figure-html/linear-2.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13606 bytes
Input file size = 13696 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10304
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10304
Output IDAT size = 10304 bytes (3302 bytes decrease)
Output file size = 10382 bytes (3314 bytes = 24.20% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/NNS.Rcheck/vign_test/NNS/vignettes/NNSvignette_Clustering_and_Regression_files/figure-html/linear-3.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13880 bytes
Input file size = 13970 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10429
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10429
Output IDAT size = 10429 bytes (3451 bytes decrease)
Output file size = 10507 bytes (3463 bytes = 24.79% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/NNS.Rcheck/vign_test/NNS/vignettes/NNSvignette_Clustering_and_Regression_files/figure-html/linear-4.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13324 bytes
Input file size = 13414 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9904
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9904
Output IDAT size = 9904 bytes (3420 bytes decrease)
Output file size = 9982 bytes (3432 bytes = 25.59% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/NNS.Rcheck/vign_test/NNS/vignettes/NNSvignette_Clustering_and_Regression_files/figure-html/x part-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13069 bytes
Input file size = 13159 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9960
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9960
Output IDAT size = 9960 bytes (3109 bytes decrease)
Output file size = 10038 bytes (3121 bytes = 23.72% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/NNS.Rcheck/vign_test/NNS/vignettes/NNSvignette_Clustering_and_Regression_files/figure-html/x part-2.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13590 bytes
Input file size = 13680 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10253
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10253
Output IDAT size = 10253 bytes (3337 bytes decrease)
Output file size = 10331 bytes (3349 bytes = 24.48% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/NNS.Rcheck/vign_test/NNS/vignettes/NNSvignette_Clustering_and_Regression_files/figure-html/x part-3.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 14000 bytes
Input file size = 14090 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10348
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10348
Output IDAT size = 10348 bytes (3652 bytes decrease)
Output file size = 10426 bytes (3664 bytes = 26.00% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/NNS.Rcheck/vign_test/NNS/vignettes/NNSvignette_Clustering_and_Regression_files/figure-html/x part-4.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 14301 bytes
Input file size = 14391 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10240
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10240
Output IDAT size = 10240 bytes (4061 bytes decrease)
Output file size = 10318 bytes (4073 bytes = 28.30% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/NNS.Rcheck/vign_test/NNS/vignettes/NNSvignette_Clustering_and_Regression_files/figure-html/depreg}-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13069 bytes
Input file size = 13159 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9960
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9960
Output IDAT size = 9960 bytes (3109 bytes decrease)
Output file size = 10038 bytes (3121 bytes = 23.72% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/NNS.Rcheck/vign_test/NNS/vignettes/NNSvignette_Clustering_and_Regression_files/figure-html/depreg}-2.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12706 bytes
Input file size = 12796 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9306
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9306
Output IDAT size = 9306 bytes (3400 bytes decrease)
Output file size = 9384 bytes (3412 bytes = 26.66% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/NNS.Rcheck/vign_test/NNS/vignettes/NNSvignette_Clustering_and_Regression_files/figure-html/depreg}-3.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13590 bytes
Input file size = 13680 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10253
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10253
Output IDAT size = 10253 bytes (3337 bytes decrease)
Output file size = 10331 bytes (3349 bytes = 24.48% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/NNS.Rcheck/vign_test/NNS/vignettes/NNSvignette_Clustering_and_Regression_files/figure-html/depreg}-4.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13043 bytes
Input file size = 13133 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9673
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9673
Output IDAT size = 9673 bytes (3370 bytes decrease)
Output file size = 9751 bytes (3382 bytes = 25.75% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/NNS.Rcheck/vign_test/NNS/vignettes/NNSvignette_Clustering_and_Regression_files/figure-html/depreg}-5.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 14000 bytes
Input file size = 14090 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10348
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10348
Output IDAT size = 10348 bytes (3652 bytes decrease)
Output file size = 10426 bytes (3664 bytes = 26.00% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/NNS.Rcheck/vign_test/NNS/vignettes/NNSvignette_Clustering_and_Regression_files/figure-html/depreg}-6.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13258 bytes
Input file size = 13348 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9804
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9804
Output IDAT size = 9804 bytes (3454 bytes decrease)
Output file size = 9882 bytes (3466 bytes = 25.97% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/NNS.Rcheck/vign_test/NNS/vignettes/NNSvignette_Clustering_and_Regression_files/figure-html/nonlinear-1.png
480x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12727 bytes
Input file size = 12817 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9861
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9861
Output IDAT size = 9861 bytes (2866 bytes decrease)
Output file size = 9939 bytes (2878 bytes = 22.45% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/NNS.Rcheck/vign_test/NNS/vignettes/NNSvignette_Clustering_and_Regression_files/figure-html/nonlinear_class-1.png
480x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20732 bytes
Input file size = 20834 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16060
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16060
Output IDAT size = 16060 bytes (4672 bytes decrease)
Output file size = 16138 bytes (4696 bytes = 22.54% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/NNS.Rcheck/vign_test/NNS/vignettes/NNSvignette_Clustering_and_Regression_files/figure-html/nonlinear class threshold-1.png
480x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20923 bytes
Input file size = 21025 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16438
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16438
Output IDAT size = 16438 bytes (4485 bytes decrease)
Output file size = 16516 bytes (4509 bytes = 21.45% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/NNS.Rcheck/vign_test/NNS/vignettes/NNSvignette_Clustering_and_Regression_files/figure-html/final-1.png
480x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 20986 bytes
Input file size = 21088 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16441
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16441
Output IDAT size = 16441 bytes (4545 bytes decrease)
Output file size = 16519 bytes (4569 bytes = 21.67% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/NNS.Rcheck/vign_test/NNS/vignettes/NNSvignette_Clustering_and_Regression_files/figure-html/class-1.png
480x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 19787 bytes
Input file size = 19889 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15312
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15312
Output IDAT size = 15312 bytes (4475 bytes decrease)
Output file size = 15390 bytes (4499 bytes = 22.62% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/NNS.Rcheck/vign_test/NNS/vignettes/NNSvignette_Clustering_and_Regression_files/figure-html/stack2res-1.png
480x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 39271 bytes
Input file size = 39397 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26573
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26573
Output IDAT size = 26573 bytes (12698 bytes decrease)
Output file size = 26651 bytes (12746 bytes = 32.35% decrease)
--- finished re-building ‘NNSvignette_Clustering_and_Regression.Rmd’
--- re-building ‘NNSvignette_Comparing_Distributions.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/NNS.Rcheck/vign_test/NNS/vignettes/NNSvignette_Comparing_Distributions_files/figure-html/cars-1.png
672x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 25631 bytes
Input file size = 25745 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19851
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19851
Output IDAT size = 19851 bytes (5780 bytes decrease)
Output file size = 19929 bytes (5816 bytes = 22.59% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/NNS.Rcheck/vign_test/NNS/vignettes/NNSvignette_Comparing_Distributions_files/figure-html/equalmeans-1.png
672x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 28233 bytes
Input file size = 28347 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21564
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21564
Output IDAT size = 21564 bytes (6669 bytes decrease)
Output file size = 21642 bytes (6705 bytes = 23.65% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/NNS.Rcheck/vign_test/NNS/vignettes/NNSvignette_Comparing_Distributions_files/figure-html/unequalmeans-1.png
672x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26622 bytes
Input file size = 26736 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20525
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20525
Output IDAT size = 20525 bytes (6097 bytes decrease)
Output file size = 20603 bytes (6133 bytes = 22.94% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/NNS.Rcheck/vign_test/NNS/vignettes/NNSvignette_Comparing_Distributions_files/figure-html/unequalmedians-1.png
672x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 27093 bytes
Input file size = 27207 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20779
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20779
Output IDAT size = 20779 bytes (6314 bytes decrease)
Output file size = 20857 bytes (6350 bytes = 23.34% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/NNS.Rcheck/vign_test/NNS/vignettes/NNSvignette_Comparing_Distributions_files/figure-html/stochdom-1.png
672x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 21489 bytes
Input file size = 21591 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16782
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16782
Output IDAT size = 16782 bytes (4707 bytes decrease)
Output file size = 16860 bytes (4731 bytes = 21.91% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/NNS.Rcheck/vign_test/NNS/vignettes/NNSvignette_Comparing_Distributions_files/figure-html/stochdomclust-1.png
672x288 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 6976 bytes
Input file size = 7834 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6468
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6415
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6415
Output IDAT size = 6415 bytes (561 bytes decrease)
Output file size = 6493 bytes (1341 bytes = 17.12% decrease)
--- finished re-building ‘NNSvignette_Comparing_Distributions.Rmd’
--- re-building ‘NNSvignette_Correlation_and_Dependence.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/NNS.Rcheck/vign_test/NNS/vignettes/NNSvignette_Correlation_and_Dependence_files/figure-html/linear1-1.png
480x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 19992 bytes
Input file size = 20094 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15788
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15788
Output IDAT size = 15788 bytes (4204 bytes decrease)
Output file size = 15866 bytes (4228 bytes = 21.04% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/NNS.Rcheck/vign_test/NNS/vignettes/NNSvignette_Correlation_and_Dependence_files/figure-html/nonlinear1-1.png
480x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 19266 bytes
Input file size = 19368 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15452
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15452
Output IDAT size = 15452 bytes (3814 bytes decrease)
Output file size = 15530 bytes (3838 bytes = 19.82% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/NNS.Rcheck/vign_test/NNS/vignettes/NNSvignette_Correlation_and_Dependence_files/figure-html/nonlinear1_sin-1.png
480x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 42224 bytes
Input file size = 42362 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33605
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 33605
Output IDAT size = 33605 bytes (8619 bytes decrease)
Output file size = 33683 bytes (8679 bytes = 20.49% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/NNS.Rcheck/vign_test/NNS/vignettes/NNSvignette_Correlation_and_Dependence_files/figure-html/circle1-1.png
480x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 33103 bytes
Input file size = 33229 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25215
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25215
Output IDAT size = 25215 bytes (7888 bytes decrease)
Output file size = 25293 bytes (7936 bytes = 23.88% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/NNS.Rcheck/vign_test/NNS/vignettes/NNSvignette_Correlation_and_Dependence_files/figure-html/perm1-1.png
480x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 24300 bytes
Input file size = 24402 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17527
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17527
Output IDAT size = 17527 bytes (6773 bytes decrease)
Output file size = 17605 bytes (6797 bytes = 27.85% decrease)
*** caught segfault ***
address 0x5b80, cause 'memory not mapped'
Traceback:
1: plot.new()
2: plot.histogram(r, freq = freq1, col = col, border = border, angle = angle, density = density, main = main, xlim = xlim, ylim = ylim, xlab = xlab, ylab = ylab, axes = axes, labels = labels, ...)
3: plot(r, freq = freq1, col = col, border = border, angle = angle, density = density, main = main, xlim = xlim, ylim = ylim, xlab = xlab, ylab = ylab, axes = axes, labels = labels, ...)
4: hist.default(cors[-c(1, 2)], main = "NNS Correlation", xlab = NULL, xlim = c(min(cors), max(cors[-1])))
5: hist(cors[-c(1, 2)], main = "NNS Correlation", xlab = NULL, xlim = c(min(cors), max(cors[-1])))
6: NNS.dep(x, y, p.value = TRUE, print.map = TRUE)
7: eval(expr, envir)
8: eval(expr, envir)
9: withVisible(eval(expr, envir))
10: withCallingHandlers(code, message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
11: eval(call)
12: eval(call)
13: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
14: doWithOneRestart(return(expr), restart)
15: withOneRestart(expr, restarts[[1L]])
16: withRestartList(expr, restarts[-nr])
17: doWithOneRestart(return(expr), restart)
18: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
19: withRestartList(expr, restarts)
20: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
21: evaluate::evaluate(...)
22: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
23: in_dir(input_dir(), expr)
24: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
25: eng_r(options)
26: block_exec(params)
27: call_block(x)
28: process_group(group)
29: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) if (xfun::pkg_available("rlang", "1.0.0")) rlang::entrace(e))
30: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) if (xfun::pkg_available("rlang", "1.0.0")) rlang::entrace(e)), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from lines ", loc) }, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
31: process_file(text, output)
32: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
33: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
34: vweave_rmarkdown(...)
35: engine$weave(file, quiet = quiet, encoding = enc)
36: doTryCatch(return(expr), name, parentenv, handler)
37: tryCatchOne(expr, names, parentenv, handlers[[1L]])
38: tryCatchList(expr, classes, parentenv, handlers)
39: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
40: tools:::.buildOneVignette("NNSvignette_Correlation_and_Dependence.Rmd", "/data/gannet/ripley/R/packages/tests-devel/NNS.Rcheck/vign_test/NNS", TRUE, FALSE, "NNSvignette_Correlation_and_Dependence", "UTF-8", "/tmp/RtmplwCpsL/working_dir/RtmpODLS5X/file24edd541ff767.rds")
An irrecoverable exception occurred. R is aborting now ...
--- re-building ‘NNSvignette_Forecasting.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/NNS.Rcheck/vign_test/NNS/vignettes/NNSvignette_Forecasting_files/figure-html/linear-1.png
480x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 25794 bytes
Input file size = 25908 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18777
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18777
Output IDAT size = 18777 bytes (7017 bytes decrease)
Output file size = 18855 bytes (7053 bytes = 27.22% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/NNS.Rcheck/vign_test/NNS/vignettes/NNSvignette_Forecasting_files/figure-html/best nonlinear-1.png
480x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 25639 bytes
Input file size = 25753 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18783
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18783
Output IDAT size = 18783 bytes (6856 bytes decrease)
Output file size = 18861 bytes (6892 bytes = 26.76% decrease)
--- finished re-building ‘NNSvignette_Forecasting.Rmd’
--- re-building ‘NNSvignette_Partial_Moments.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/NNS.Rcheck/vign_test/NNS/vignettes/NNSvignette_Partial_Moments_files/figure-html/cdfs-1.png
480x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 16144 bytes
Input file size = 16234 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12803
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12803
Output IDAT size = 12803 bytes (3341 bytes decrease)
Output file size = 12881 bytes (3353 bytes = 20.65% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/NNS.Rcheck/vign_test/NNS/vignettes/NNSvignette_Partial_Moments_files/figure-html/cdfs-2.png
480x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13160 bytes
Input file size = 13250 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9939
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9939
Output IDAT size = 9939 bytes (3221 bytes decrease)
Output file size = 10017 bytes (3233 bytes = 24.40% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/NNS.Rcheck/vign_test/NNS/vignettes/NNSvignette_Partial_Moments_files/figure-html/cdfs-3.png
480x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13076 bytes
Input file size = 13166 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9217
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9217
Output IDAT size = 9217 bytes (3859 bytes decrease)
Output file size = 9295 bytes (3871 bytes = 29.40% decrease)
--- finished re-building ‘NNSvignette_Partial_Moments.Rmd’
--- re-building ‘NNSvignette_Sampling.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/NNS.Rcheck/vign_test/NNS/vignettes/NNSvignette_Sampling_files/figure-html/unnamed-chunk-3-1.png
576x576 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 24506 bytes
Input file size = 24608 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20961
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 20504
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 20504
Output IDAT size = 20504 bytes (4002 bytes decrease)
Output file size = 20582 bytes (4026 bytes = 16.36% decrease)
--- finished re-building ‘NNSvignette_Sampling.Rmd’
SUMMARY: processing the following file failed:
‘NNSvignette_Correlation_and_Dependence.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 11.0
Check: for GNU extensions in Makefiles
Result: NOTE
GNU make is a SystemRequirements.
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64