Last updated on 2023-12-10 07:49:33 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.2 | 48.74 | 575.52 | 624.26 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.2 | 40.01 | 423.85 | 463.86 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.2 | 807.69 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.2 | 797.87 | NOTE | |||
| r-devel-windows-x86_64 | 1.0.2 | 37.00 | 404.00 | 441.00 | OK | |
| r-patched-linux-x86_64 | 1.0.2 | 40.09 | 554.43 | 594.52 | OK | |
| r-release-linux-x86_64 | 1.0.2 | 32.79 | 549.84 | 582.63 | OK | |
| r-release-macos-arm64 | 1.0.2 | 213.00 | ERROR | |||
| r-release-macos-x86_64 | 1.0.2 | 471.00 | ERROR | |||
| r-release-windows-x86_64 | 1.0.2 | 48.00 | 520.00 | 568.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.2 | 201.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 1.0.1 | 267.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.0.2 | 51.00 | 527.00 | 578.00 | OK |
Version: 1.0.2
Check: data for non-ASCII characters
Result: NOTE
Note: found 107 marked UTF-8 strings
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.0.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [24s/32s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
── Error ('test-formattedCombiner.R:61:1'): (code run outside of `test_that()`) ──
Error in `xml2::read_xml(.)`: `x` must be a single string, not a character vector.
Backtrace:
▆
1. ├─BeeBDC::formattedCombiner(...) at test-formattedCombiner.R:61:1
2. │ └─... %>% xml2::read_xml()
3. ├─xml2::read_xml(.)
4. └─xml2:::read_xml.character(x = .)
5. └─xml2:::check_string(x)
6. └─xml2:::stop_input_type(...)
7. └─rlang::abort(message, ..., call = call, arg = arg)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 228 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-arm64
Version: 1.0.2
Check: examples
Result: ERROR
Running examples in ‘BeeBDC-Ex.R’ failed
The error most likely occurred in:
> ### Name: interactiveMapR
> ### Title: Creates interactive html maps for species
> ### Aliases: interactiveMapR
>
> ### ** Examples
>
> OutPath_Figures <- tempdir()
>
> interactiveMapR(
+ # occurrence data - start with entire dataset, filter down to these species
+ data = BeeBDC::bees3sp, # %>%
+ # Select only those species in the 100 randomly chosen
+ # dplyr::filter(scientificName %in% beeData_interactive$scientificName),
+ # Select only one species to map
+ # dplyr::filter(scientificName %in% "Agapostemon sericeus (Forster, 1771)"),
+ # Directory where to save files
+ outPath = paste0(OutPath_Figures, "/interactiveMaps_TEST"),
+ # lat long columns
+ lon = "decimalLongitude",
+ lat = "decimalLatitude",
+ # Occurrence dataset column with species names
+ speciesColumn = "scientificName",
+ # Which species to map - a character vector of names or "ALL"
+ # Note: "ALL" is defined AFTER filtering for country
+ speciesList = "ALL",
+ # studyArea
+ countryList = NULL,
+ # Point jitter to see stacked points - jitters an amount in decimal degrees
+ jitterValue = 0.01,
+ # If TRUE, it will only map the .summary column. Otherwise, it will map .summary
+ # which will be over-written by countryOutliers and manualOutliers
+ onlySummary = TRUE,
+ excludeApis_mellifera = TRUE,
+ overWrite = TRUE,
+ # Colours for points which are flagged as TRUE, FALSE, countryOutlier, and customOutlier
+ pointColours = c("blue", "darkred","#ff7f00", "black")
+ )
Loading required namespace: htmlwidgets
Loading required namespace: leaflet
The column .expertOutlier was not found. One will be created with all values = TRUE.
Error in pandoc_self_contained_html(file, file) :
Saving a widget with selfcontained = TRUE requires pandoc. See here to learn more https://bookdown.org/yihui/rmarkdown-cookbook/install-pandoc.html
Calls: interactiveMapR -> <Anonymous> -> pandoc_self_contained_html
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.0.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [40s/81s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
are planar
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 228 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-interactiveMapR.R:9:1'): (code run outside of `test_that()`) ───
Error in `pandoc_self_contained_html(file, file)`: Saving a widget with selfcontained = TRUE requires pandoc. See here to learn more https://bookdown.org/yihui/rmarkdown-cookbook/install-pandoc.html
Backtrace:
▆
1. └─BeeBDC::interactiveMapR(...) at test-interactiveMapR.R:9:1
2. └─htmlwidgets::saveWidget(...)
3. └─htmlwidgets:::pandoc_self_contained_html(file, file)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 228 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.0.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [24s/33s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
── Error ('test-formattedCombiner.R:61:1'): (code run outside of `test_that()`) ──
Error in `xml2::read_xml(.)`: `x` must be a single string, not a character vector.
Backtrace:
▆
1. ├─BeeBDC::formattedCombiner(...) at test-formattedCombiner.R:61:1
2. │ └─... %>% xml2::read_xml()
3. ├─xml2::read_xml(.)
4. └─xml2:::read_xml.character(x = .)
5. └─xml2:::check_string(x)
6. └─xml2:::stop_input_type(...)
7. └─rlang::abort(message, ..., call = call, arg = arg)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 228 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-arm64